Strain Fitness in Sinorhizobium meliloti 1021 around SMc00728

Experiment: Paraquat dichloride 0.2 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00729 and SMc00728 are separated by 116 nucleotidesSMc00728 and SMc00727 are separated by 143 nucleotides SMc00729: SMc00729 - electron transfer flavoprotein BETA-subunit BETA-ETF flavoprotein small subunit, at 2,850,694 to 2,851,443 SMc00729 SMc00728: SMc00728 - electron transfer flavoprotein alpha-subunit alpha-ETF flavoprotein, at 2,851,560 to 2,852,489 SMc00728 SMc00727: SMc00727 - 3-hydroxybutyryl-CoA dehydrogenase, at 2,852,633 to 2,853,505 SMc00727 Position (kb) 2851 2852 2853Strain fitness (log2 ratio) -1 0 1at 2850.577 kb on + strandat 2850.651 kb on + strandat 2852.539 kb on + strandat 2852.708 kb on + strandat 2852.708 kb on + strandat 2852.709 kb on - strandat 2852.709 kb on - strandat 2852.710 kb on + strandat 2852.711 kb on - strandat 2852.711 kb on - strandat 2852.724 kb on - strand, within SMc00727at 2852.930 kb on + strand, within SMc00727at 2852.965 kb on + strand, within SMc00727at 2852.965 kb on + strand, within SMc00727at 2852.965 kb on + strand, within SMc00727at 2852.965 kb on + strand, within SMc00727at 2853.090 kb on + strand, within SMc00727at 2853.091 kb on - strand, within SMc00727at 2853.234 kb on - strand, within SMc00727at 2853.242 kb on + strand, within SMc00727at 2853.242 kb on + strand, within SMc00727at 2853.242 kb on + strand, within SMc00727at 2853.243 kb on - strand, within SMc00727at 2853.285 kb on - strand, within SMc00727at 2853.395 kb on + strand, within SMc00727at 2853.396 kb on - strand, within SMc00727at 2853.396 kb on - strand, within SMc00727at 2853.422 kb on + strandat 2853.423 kb on - strandat 2853.467 kb on + strandat 2853.467 kb on + strandat 2853.468 kb on - strandat 2853.468 kb on - strandat 2853.468 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
remove
2,850,577 + +1.1
2,850,651 + +1.7
2,852,539 + +0.8
2,852,708 + +1.5
2,852,708 + +1.1
2,852,709 - +0.4
2,852,709 - +1.2
2,852,710 + +1.1
2,852,711 - +1.3
2,852,711 - +1.5
2,852,724 - SMc00727 0.10 +0.4
2,852,930 + SMc00727 0.34 +1.0
2,852,965 + SMc00727 0.38 +1.5
2,852,965 + SMc00727 0.38 +1.2
2,852,965 + SMc00727 0.38 +0.9
2,852,965 + SMc00727 0.38 +1.4
2,853,090 + SMc00727 0.52 +1.2
2,853,091 - SMc00727 0.52 +1.1
2,853,234 - SMc00727 0.69 +0.6
2,853,242 + SMc00727 0.70 +0.4
2,853,242 + SMc00727 0.70 -1.0
2,853,242 + SMc00727 0.70 +0.5
2,853,243 - SMc00727 0.70 +0.9
2,853,285 - SMc00727 0.75 +1.6
2,853,395 + SMc00727 0.87 -0.0
2,853,396 - SMc00727 0.87 +0.8
2,853,396 - SMc00727 0.87 +0.4
2,853,422 + +1.4
2,853,423 - -0.0
2,853,467 + -1.0
2,853,467 + +1.2
2,853,468 - +1.7
2,853,468 - +1.6
2,853,468 - +1.5

Or see this region's nucleotide sequence