Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00402 and SMc00403 are separated by 154 nucleotides SMc00403 and SMc00404 are separated by 136 nucleotides SMc00404 and SMc00405 are separated by 460 nucleotides
SMc00402: SMc00402 - signal peptide protein, at 352,658 to 353,938
SMc00402
SMc00403: SMc00403 - NOL1/NOP2/SUN family signature protein, at 354,093 to 355,382
SMc00403
SMc00404: SMc00404 - hypothetical protein, at 355,519 to 355,893
SMc00404
SMc00405: SMc00405 - hypothetical protein, at 356,354 to 357,229
SMc00405
Position (kb)
354
355
356 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 353.130 kb on + strand, within SMc00402 at 353.278 kb on - strand, within SMc00402 at 353.571 kb on + strand, within SMc00402 at 353.572 kb on - strand, within SMc00402 at 353.586 kb on + strand, within SMc00402 at 353.587 kb on - strand, within SMc00402 at 353.665 kb on - strand, within SMc00402 at 353.802 kb on + strand, within SMc00402 at 353.803 kb on - strand, within SMc00402 at 353.970 kb on + strand at 353.970 kb on + strand at 353.971 kb on - strand at 353.971 kb on - strand at 354.094 kb on + strand at 354.195 kb on - strand at 354.272 kb on - strand, within SMc00403 at 354.317 kb on - strand, within SMc00403 at 354.566 kb on + strand, within SMc00403 at 354.598 kb on + strand, within SMc00403 at 354.617 kb on + strand, within SMc00403 at 354.618 kb on - strand, within SMc00403 at 354.618 kb on - strand, within SMc00403 at 354.670 kb on + strand, within SMc00403 at 354.777 kb on + strand, within SMc00403 at 354.777 kb on + strand, within SMc00403 at 355.151 kb on - strand, within SMc00403 at 355.198 kb on + strand, within SMc00403 at 355.198 kb on + strand, within SMc00403 at 355.198 kb on + strand, within SMc00403 at 355.199 kb on - strand, within SMc00403 at 355.232 kb on - strand, within SMc00403 at 355.449 kb on + strand at 355.449 kb on + strand at 355.453 kb on + strand at 355.453 kb on + strand at 355.453 kb on + strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.538 kb on + strand at 355.538 kb on + strand at 355.776 kb on - strand, within SMc00404 at 355.947 kb on - strand at 356.348 kb on - strand at 356.355 kb on + strand at 356.355 kb on + strand at 356.355 kb on + strand at 356.355 kb on + strand at 356.356 kb on - strand at 356.356 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 353,130 + SMc00402 0.37 +0.8 353,278 - SMc00402 0.48 -0.4 353,571 + SMc00402 0.71 +0.6 353,572 - SMc00402 0.71 -0.2 353,586 + SMc00402 0.72 +2.1 353,587 - SMc00402 0.73 +0.1 353,665 - SMc00402 0.79 -0.0 353,802 + SMc00402 0.89 -0.7 353,803 - SMc00402 0.89 -0.2 353,970 + -0.5 353,970 + +2.2 353,971 - +0.2 353,971 - -0.4 354,094 + -1.0 354,195 - +1.5 354,272 - SMc00403 0.14 +1.0 354,317 - SMc00403 0.17 +1.9 354,566 + SMc00403 0.37 +1.5 354,598 + SMc00403 0.39 -0.0 354,617 + SMc00403 0.41 +2.6 354,618 - SMc00403 0.41 +0.1 354,618 - SMc00403 0.41 +1.3 354,670 + SMc00403 0.45 +1.0 354,777 + SMc00403 0.53 +0.6 354,777 + SMc00403 0.53 +1.6 355,151 - SMc00403 0.82 +0.9 355,198 + SMc00403 0.86 +0.9 355,198 + SMc00403 0.86 -2.6 355,198 + SMc00403 0.86 +1.9 355,199 - SMc00403 0.86 +2.1 355,232 - SMc00403 0.88 +1.3 355,449 + +1.1 355,449 + -0.5 355,453 + +0.5 355,453 + +0.8 355,453 + +0.3 355,454 - -0.9 355,454 - -2.2 355,454 - -2.5 355,454 - -0.1 355,454 - -0.6 355,454 - -2.4 355,454 - -0.4 355,538 + -0.8 355,538 + -0.6 355,776 - SMc00404 0.69 -0.8 355,947 - +0.0 356,348 - -0.2 356,355 + -0.3 356,355 + -0.4 356,355 + -1.8 356,355 + -1.7 356,356 - +0.1 356,356 - -0.3
Or see this region's nucleotide sequence