Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00256 and SMc00257 are separated by 261 nucleotides SMc00257 and SMc00258 are separated by 157 nucleotides SMc00258 and SMc00259 are separated by 16 nucleotides
SMc00256: SMc00256 - transcriptional regulator, at 1,824,818 to 1,825,825
SMc00256
SMc00257: SMc00257 - outer-membrane protein, at 1,826,087 to 1,826,734
SMc00257
SMc00258: SMc00258 - signal peptide protein, at 1,826,892 to 1,827,155
SMc00258
SMc00259: SMc00259 - hypothetical protein, at 1,827,172 to 1,828,029
SMc00259
Position (kb)
1826
1827 Strain fitness (log2 ratio)
-2
-1
0
1 at 1825.234 kb on - strand, within SMc00256 at 1825.338 kb on + strand, within SMc00256 at 1825.339 kb on - strand, within SMc00256 at 1825.342 kb on + strand, within SMc00256 at 1825.343 kb on - strand, within SMc00256 at 1826.045 kb on - strand at 1826.046 kb on + strand at 1826.046 kb on + strand at 1826.046 kb on + strand at 1826.046 kb on + strand at 1826.055 kb on - strand at 1826.055 kb on - strand at 1826.209 kb on - strand, within SMc00257 at 1826.222 kb on + strand, within SMc00257 at 1826.223 kb on - strand, within SMc00257 at 1826.330 kb on + strand, within SMc00257 at 1826.331 kb on - strand, within SMc00257 at 1826.336 kb on + strand, within SMc00257 at 1826.336 kb on + strand, within SMc00257 at 1826.337 kb on - strand, within SMc00257 at 1826.337 kb on - strand, within SMc00257 at 1826.337 kb on - strand, within SMc00257 at 1826.337 kb on - strand, within SMc00257 at 1826.479 kb on - strand, within SMc00257 at 1826.603 kb on + strand, within SMc00257 at 1826.640 kb on - strand, within SMc00257 at 1826.645 kb on + strand, within SMc00257 at 1826.646 kb on - strand, within SMc00257 at 1826.707 kb on + strand at 1826.708 kb on - strand at 1826.878 kb on + strand at 1827.079 kb on + strand, within SMc00258 at 1827.224 kb on + strand at 1827.229 kb on + strand at 1827.229 kb on + strand at 1827.230 kb on - strand at 1827.230 kb on - strand at 1827.230 kb on - strand at 1827.244 kb on + strand at 1827.244 kb on + strand at 1827.244 kb on + strand at 1827.244 kb on + strand at 1827.245 kb on - strand at 1827.330 kb on + strand, within SMc00259 at 1827.330 kb on + strand, within SMc00259 at 1827.650 kb on - strand, within SMc00259 at 1827.650 kb on - strand, within SMc00259
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,825,234 - SMc00256 0.41 +0.0 1,825,338 + SMc00256 0.52 -1.2 1,825,339 - SMc00256 0.52 -2.0 1,825,342 + SMc00256 0.52 -0.8 1,825,343 - SMc00256 0.52 +1.3 1,826,045 - -1.1 1,826,046 + -2.0 1,826,046 + -0.5 1,826,046 + -0.0 1,826,046 + +0.3 1,826,055 - +0.4 1,826,055 - +0.3 1,826,209 - SMc00257 0.19 -0.1 1,826,222 + SMc00257 0.21 -0.9 1,826,223 - SMc00257 0.21 -0.1 1,826,330 + SMc00257 0.38 -2.0 1,826,331 - SMc00257 0.38 +1.2 1,826,336 + SMc00257 0.38 -0.6 1,826,336 + SMc00257 0.38 -0.8 1,826,337 - SMc00257 0.39 +0.2 1,826,337 - SMc00257 0.39 -0.3 1,826,337 - SMc00257 0.39 -1.1 1,826,337 - SMc00257 0.39 -0.3 1,826,479 - SMc00257 0.60 -0.3 1,826,603 + SMc00257 0.80 -0.7 1,826,640 - SMc00257 0.85 -0.8 1,826,645 + SMc00257 0.86 -0.4 1,826,646 - SMc00257 0.86 -0.0 1,826,707 + -0.8 1,826,708 - +0.3 1,826,878 + -0.3 1,827,079 + SMc00258 0.71 -1.2 1,827,224 + +0.3 1,827,229 + +0.8 1,827,229 + +1.2 1,827,230 - +0.0 1,827,230 - -0.3 1,827,230 - +0.2 1,827,244 + +1.1 1,827,244 + +0.5 1,827,244 + +1.7 1,827,244 + +0.1 1,827,245 - -0.1 1,827,330 + SMc00259 0.18 -0.2 1,827,330 + SMc00259 0.18 -1.9 1,827,650 - SMc00259 0.56 -0.6 1,827,650 - SMc00259 0.56 -0.3
Or see this region's nucleotide sequence