Strain Fitness in Sinorhizobium meliloti 1021 around SMc00257

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00256 and SMc00257 are separated by 261 nucleotidesSMc00257 and SMc00258 are separated by 157 nucleotidesSMc00258 and SMc00259 are separated by 16 nucleotides SMc00256: SMc00256 - transcriptional regulator, at 1,824,818 to 1,825,825 SMc00256 SMc00257: SMc00257 - outer-membrane protein, at 1,826,087 to 1,826,734 SMc00257 SMc00258: SMc00258 - signal peptide protein, at 1,826,892 to 1,827,155 SMc00258 SMc00259: SMc00259 - hypothetical protein, at 1,827,172 to 1,828,029 SMc00259 Position (kb) 1826 1827Strain fitness (log2 ratio) -2 -1 0 1at 1825.234 kb on - strand, within SMc00256at 1825.338 kb on + strand, within SMc00256at 1825.339 kb on - strand, within SMc00256at 1825.342 kb on + strand, within SMc00256at 1825.343 kb on - strand, within SMc00256at 1826.045 kb on - strandat 1826.046 kb on + strandat 1826.046 kb on + strandat 1826.046 kb on + strandat 1826.046 kb on + strandat 1826.055 kb on - strandat 1826.055 kb on - strandat 1826.209 kb on - strand, within SMc00257at 1826.222 kb on + strand, within SMc00257at 1826.223 kb on - strand, within SMc00257at 1826.330 kb on + strand, within SMc00257at 1826.331 kb on - strand, within SMc00257at 1826.336 kb on + strand, within SMc00257at 1826.336 kb on + strand, within SMc00257at 1826.337 kb on - strand, within SMc00257at 1826.337 kb on - strand, within SMc00257at 1826.337 kb on - strand, within SMc00257at 1826.337 kb on - strand, within SMc00257at 1826.479 kb on - strand, within SMc00257at 1826.603 kb on + strand, within SMc00257at 1826.640 kb on - strand, within SMc00257at 1826.645 kb on + strand, within SMc00257at 1826.646 kb on - strand, within SMc00257at 1826.707 kb on + strandat 1826.708 kb on - strandat 1826.878 kb on + strandat 1827.079 kb on + strand, within SMc00258at 1827.224 kb on + strandat 1827.229 kb on + strandat 1827.229 kb on + strandat 1827.230 kb on - strandat 1827.230 kb on - strandat 1827.230 kb on - strandat 1827.244 kb on + strandat 1827.244 kb on + strandat 1827.244 kb on + strandat 1827.244 kb on + strandat 1827.245 kb on - strandat 1827.330 kb on + strand, within SMc00259at 1827.330 kb on + strand, within SMc00259at 1827.650 kb on - strand, within SMc00259at 1827.650 kb on - strand, within SMc00259

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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1,825,234 - SMc00256 0.41 +0.0
1,825,338 + SMc00256 0.52 -1.2
1,825,339 - SMc00256 0.52 -2.0
1,825,342 + SMc00256 0.52 -0.8
1,825,343 - SMc00256 0.52 +1.3
1,826,045 - -1.1
1,826,046 + -2.0
1,826,046 + -0.5
1,826,046 + -0.0
1,826,046 + +0.3
1,826,055 - +0.4
1,826,055 - +0.3
1,826,209 - SMc00257 0.19 -0.1
1,826,222 + SMc00257 0.21 -0.9
1,826,223 - SMc00257 0.21 -0.1
1,826,330 + SMc00257 0.38 -2.0
1,826,331 - SMc00257 0.38 +1.2
1,826,336 + SMc00257 0.38 -0.6
1,826,336 + SMc00257 0.38 -0.8
1,826,337 - SMc00257 0.39 +0.2
1,826,337 - SMc00257 0.39 -0.3
1,826,337 - SMc00257 0.39 -1.1
1,826,337 - SMc00257 0.39 -0.3
1,826,479 - SMc00257 0.60 -0.3
1,826,603 + SMc00257 0.80 -0.7
1,826,640 - SMc00257 0.85 -0.8
1,826,645 + SMc00257 0.86 -0.4
1,826,646 - SMc00257 0.86 -0.0
1,826,707 + -0.8
1,826,708 - +0.3
1,826,878 + -0.3
1,827,079 + SMc00258 0.71 -1.2
1,827,224 + +0.3
1,827,229 + +0.8
1,827,229 + +1.2
1,827,230 - +0.0
1,827,230 - -0.3
1,827,230 - +0.2
1,827,244 + +1.1
1,827,244 + +0.5
1,827,244 + +1.7
1,827,244 + +0.1
1,827,245 - -0.1
1,827,330 + SMc00259 0.18 -0.2
1,827,330 + SMc00259 0.18 -1.9
1,827,650 - SMc00259 0.56 -0.6
1,827,650 - SMc00259 0.56 -0.3

Or see this region's nucleotide sequence