Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1933 and SMa1935 are separated by 154 nucleotides SMa1935 and SMa1937 overlap by 4 nucleotides
SMa1933: SMa1933 - LysR family transcriptional regulator, at 1,098,786 to 1,099,427
SMa1933
SMa1935: SMa1935 - TrpR binding protein WrbA, at 1,099,582 to 1,100,220
SMa1935
SMa1937: SMa1937 - hypothetical protein, at 1,100,217 to 1,101,455
SMa1937
Position (kb)
1099
1100
1101 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1098.592 kb on + strand at 1098.592 kb on + strand at 1098.592 kb on + strand at 1098.593 kb on - strand at 1098.788 kb on - strand at 1098.953 kb on + strand at 1098.954 kb on - strand, within SMa1933 at 1098.954 kb on - strand, within SMa1933 at 1099.225 kb on - strand, within SMa1933 at 1099.432 kb on + strand at 1099.432 kb on + strand at 1099.432 kb on + strand at 1099.440 kb on - strand at 1099.468 kb on + strand at 1099.494 kb on + strand at 1099.494 kb on + strand at 1099.495 kb on - strand at 1099.607 kb on - strand at 1099.616 kb on - strand at 1099.787 kb on - strand, within SMa1935 at 1100.006 kb on + strand, within SMa1935 at 1100.006 kb on + strand, within SMa1935 at 1100.007 kb on - strand, within SMa1935 at 1100.007 kb on - strand, within SMa1935 at 1100.035 kb on - strand, within SMa1935 at 1100.063 kb on - strand, within SMa1935 at 1100.309 kb on + strand at 1100.668 kb on + strand, within SMa1937 at 1100.668 kb on + strand, within SMa1937 at 1100.755 kb on - strand, within SMa1937 at 1100.875 kb on + strand, within SMa1937 at 1100.876 kb on - strand, within SMa1937 at 1101.029 kb on - strand, within SMa1937 at 1101.114 kb on - strand, within SMa1937 at 1101.135 kb on + strand, within SMa1937
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,098,592 + +0.4 1,098,592 + -0.4 1,098,592 + +0.6 1,098,593 - -0.6 1,098,788 - -1.9 1,098,953 + -1.9 1,098,954 - SMa1933 0.26 +0.5 1,098,954 - SMa1933 0.26 -0.6 1,099,225 - SMa1933 0.68 +0.1 1,099,432 + +0.9 1,099,432 + +0.5 1,099,432 + -0.2 1,099,440 - +0.1 1,099,468 + -2.5 1,099,494 + -1.6 1,099,494 + -0.0 1,099,495 - +0.3 1,099,607 - -0.7 1,099,616 - +0.0 1,099,787 - SMa1935 0.32 +1.0 1,100,006 + SMa1935 0.66 +0.2 1,100,006 + SMa1935 0.66 +0.6 1,100,007 - SMa1935 0.67 +0.4 1,100,007 - SMa1935 0.67 -0.3 1,100,035 - SMa1935 0.71 -3.5 1,100,063 - SMa1935 0.75 +0.1 1,100,309 + +0.3 1,100,668 + SMa1937 0.36 -0.6 1,100,668 + SMa1937 0.36 -0.1 1,100,755 - SMa1937 0.43 -3.0 1,100,875 + SMa1937 0.53 +0.1 1,100,876 - SMa1937 0.53 -0.2 1,101,029 - SMa1937 0.66 +0.4 1,101,114 - SMa1937 0.72 +0.8 1,101,135 + SMa1937 0.74 +0.3
Or see this region's nucleotide sequence