Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1503 and SMa1505 are separated by 216 nucleotides SMa1505 and SMa1507 are separated by 53 nucleotides
SMa1503: SMa1503 - hypothetical protein, at 829,300 to 830,166
SMa1503
SMa1505: SMa1505 - GntR family transcriptional regulator, at 830,383 to 831,168
SMa1505
SMa1507: SMa1507 - hypothetical protein, at 831,222 to 832,316
SMa1507
Position (kb) 830
831
832 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 829.514 kb on + strand, within SMa1503 at 829.576 kb on + strand, within SMa1503 at 829.576 kb on + strand, within SMa1503 at 829.593 kb on + strand, within SMa1503 at 829.613 kb on + strand, within SMa1503 at 829.613 kb on + strand, within SMa1503 at 829.646 kb on + strand, within SMa1503 at 829.646 kb on + strand, within SMa1503 at 829.647 kb on - strand, within SMa1503 at 829.652 kb on + strand, within SMa1503 at 829.652 kb on + strand, within SMa1503 at 829.653 kb on - strand, within SMa1503 at 829.653 kb on - strand, within SMa1503 at 829.751 kb on + strand, within SMa1503 at 829.826 kb on - strand, within SMa1503 at 829.869 kb on + strand, within SMa1503 at 829.870 kb on - strand, within SMa1503 at 829.870 kb on - strand, within SMa1503 at 829.889 kb on + strand, within SMa1503 at 829.890 kb on - strand, within SMa1503 at 830.628 kb on - strand, within SMa1505 at 830.629 kb on + strand, within SMa1505 at 830.630 kb on - strand, within SMa1505 at 830.630 kb on - strand, within SMa1505 at 830.790 kb on + strand, within SMa1505 at 830.790 kb on + strand, within SMa1505 at 830.790 kb on + strand, within SMa1505 at 830.897 kb on - strand, within SMa1505 at 831.000 kb on - strand, within SMa1505 at 831.007 kb on + strand, within SMa1505 at 831.007 kb on + strand, within SMa1505 at 831.007 kb on + strand, within SMa1505 at 831.007 kb on + strand, within SMa1505 at 831.008 kb on - strand, within SMa1505 at 831.009 kb on + strand, within SMa1505 at 831.009 kb on + strand, within SMa1505 at 831.009 kb on + strand, within SMa1505 at 831.010 kb on - strand, within SMa1505 at 831.010 kb on - strand, within SMa1505 at 831.010 kb on - strand, within SMa1505 at 831.010 kb on - strand, within SMa1505 at 831.167 kb on - strand at 831.256 kb on - strand at 831.342 kb on + strand, within SMa1507 at 831.342 kb on + strand, within SMa1507 at 831.343 kb on - strand, within SMa1507 at 831.639 kb on + strand, within SMa1507 at 831.643 kb on - strand, within SMa1507 at 831.681 kb on - strand, within SMa1507 at 831.681 kb on - strand, within SMa1507 at 831.681 kb on - strand, within SMa1507 at 831.681 kb on - strand, within SMa1507 at 831.851 kb on + strand, within SMa1507 at 831.910 kb on + strand, within SMa1507 at 831.910 kb on + strand, within SMa1507 at 831.998 kb on + strand, within SMa1507 at 831.999 kb on - strand, within SMa1507 at 832.113 kb on + strand, within SMa1507 at 832.113 kb on + strand, within SMa1507 at 832.114 kb on - strand, within SMa1507 at 832.114 kb on - strand, within SMa1507
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 829,514 + SMa1503 0.25 -0.7 829,576 + SMa1503 0.32 +0.0 829,576 + SMa1503 0.32 -0.3 829,593 + SMa1503 0.34 -0.1 829,613 + SMa1503 0.36 +0.0 829,613 + SMa1503 0.36 -0.0 829,646 + SMa1503 0.40 +0.1 829,646 + SMa1503 0.40 -2.2 829,647 - SMa1503 0.40 +1.8 829,652 + SMa1503 0.41 -1.2 829,652 + SMa1503 0.41 +0.7 829,653 - SMa1503 0.41 +0.6 829,653 - SMa1503 0.41 -0.4 829,751 + SMa1503 0.52 +0.9 829,826 - SMa1503 0.61 -0.1 829,869 + SMa1503 0.66 -2.5 829,870 - SMa1503 0.66 -0.4 829,870 - SMa1503 0.66 +0.1 829,889 + SMa1503 0.68 -0.7 829,890 - SMa1503 0.68 -0.4 830,628 - SMa1505 0.31 +0.7 830,629 + SMa1505 0.31 +0.0 830,630 - SMa1505 0.31 +0.3 830,630 - SMa1505 0.31 -0.1 830,790 + SMa1505 0.52 -0.1 830,790 + SMa1505 0.52 +0.3 830,790 + SMa1505 0.52 -0.8 830,897 - SMa1505 0.65 -1.7 831,000 - SMa1505 0.78 -1.3 831,007 + SMa1505 0.79 -2.9 831,007 + SMa1505 0.79 -0.7 831,007 + SMa1505 0.79 -1.2 831,007 + SMa1505 0.79 -1.9 831,008 - SMa1505 0.80 -1.8 831,009 + SMa1505 0.80 +0.4 831,009 + SMa1505 0.80 -3.1 831,009 + SMa1505 0.80 -0.5 831,010 - SMa1505 0.80 -2.8 831,010 - SMa1505 0.80 +2.7 831,010 - SMa1505 0.80 +0.2 831,010 - SMa1505 0.80 -0.3 831,167 - -0.1 831,256 - +0.7 831,342 + SMa1507 0.11 +0.6 831,342 + SMa1507 0.11 +0.8 831,343 - SMa1507 0.11 +0.0 831,639 + SMa1507 0.38 +0.5 831,643 - SMa1507 0.38 +1.0 831,681 - SMa1507 0.42 +0.1 831,681 - SMa1507 0.42 +1.8 831,681 - SMa1507 0.42 -1.9 831,681 - SMa1507 0.42 -0.8 831,851 + SMa1507 0.57 +0.1 831,910 + SMa1507 0.63 -1.0 831,910 + SMa1507 0.63 +0.7 831,998 + SMa1507 0.71 +0.3 831,999 - SMa1507 0.71 +1.3 832,113 + SMa1507 0.81 +0.7 832,113 + SMa1507 0.81 +0.0 832,114 - SMa1507 0.81 -0.3 832,114 - SMa1507 0.81 +0.2
Or see this region's nucleotide sequence