Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1397 and SMa1398 are separated by 8 nucleotides SMa1398 and SMa1400 overlap by 4 nucleotides SMa1400 and SMa1403 are separated by 159 nucleotides
SMa1397: SMa1397 - hypothetical protein, at 767,799 to 768,947
SMa1397
SMa1398: SMa1398 - 3-ketoacyl-ACP reductase, at 768,956 to 769,735
SMa1398
SMa1400: SMa1400 - acyl-CoA dehydrogenase, at 769,732 to 770,874
SMa1400
SMa1403: SMa1403 - oxidoreductase, at 771,034 to 772,050
SMa1403
Position (kb) 769
770
771 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 768.905 kb on - strand at 768.905 kb on - strand at 769.113 kb on + strand, within SMa1398 at 769.249 kb on - strand, within SMa1398 at 769.249 kb on - strand, within SMa1398 at 769.829 kb on + strand at 770.485 kb on + strand, within SMa1400 at 770.520 kb on - strand, within SMa1400 at 770.676 kb on - strand, within SMa1400 at 770.676 kb on - strand, within SMa1400 at 771.208 kb on + strand, within SMa1403 at 771.208 kb on + strand, within SMa1403 at 771.209 kb on - strand, within SMa1403 at 771.271 kb on + strand, within SMa1403 at 771.272 kb on - strand, within SMa1403 at 771.272 kb on - strand, within SMa1403 at 771.376 kb on + strand, within SMa1403 at 771.382 kb on + strand, within SMa1403 at 771.382 kb on + strand, within SMa1403 at 771.382 kb on + strand, within SMa1403 at 771.382 kb on + strand, within SMa1403 at 771.501 kb on - strand, within SMa1403 at 771.656 kb on - strand, within SMa1403 at 771.657 kb on + strand, within SMa1403 at 771.657 kb on + strand, within SMa1403 at 771.658 kb on - strand at 771.658 kb on - strand, within SMa1403 at 771.790 kb on + strand, within SMa1403 at 771.790 kb on + strand, within SMa1403 at 771.791 kb on - strand, within SMa1403 at 771.791 kb on - strand, within SMa1403 at 771.791 kb on - strand, within SMa1403 at 771.813 kb on - strand, within SMa1403 at 771.813 kb on - strand, within SMa1403
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 768,905 - -0.9 768,905 - +0.2 769,113 + SMa1398 0.20 +0.1 769,249 - SMa1398 0.38 -0.9 769,249 - SMa1398 0.38 -1.7 769,829 + -0.8 770,485 + SMa1400 0.66 -0.5 770,520 - SMa1400 0.69 +1.6 770,676 - SMa1400 0.83 -2.8 770,676 - SMa1400 0.83 -0.9 771,208 + SMa1403 0.17 -1.0 771,208 + SMa1403 0.17 +0.4 771,209 - SMa1403 0.17 +0.1 771,271 + SMa1403 0.23 -0.5 771,272 - SMa1403 0.23 +0.8 771,272 - SMa1403 0.23 -0.2 771,376 + SMa1403 0.34 +0.5 771,382 + SMa1403 0.34 -3.0 771,382 + SMa1403 0.34 +0.1 771,382 + SMa1403 0.34 -0.0 771,382 + SMa1403 0.34 -1.1 771,501 - SMa1403 0.46 +0.4 771,656 - SMa1403 0.61 -0.6 771,657 + SMa1403 0.61 -1.3 771,657 + SMa1403 0.61 -1.9 771,658 - -0.9 771,658 - SMa1403 0.61 -0.3 771,790 + SMa1403 0.74 -0.2 771,790 + SMa1403 0.74 -0.2 771,791 - SMa1403 0.74 -2.9 771,791 - SMa1403 0.74 -2.8 771,791 - SMa1403 0.74 +0.5 771,813 - SMa1403 0.77 +0.0 771,813 - SMa1403 0.77 -0.4
Or see this region's nucleotide sequence