Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1370 and SMa1371 overlap by 4 nucleotides SMa1371 and SMa1374 are separated by 2 nucleotides SMa1374 and SMa1373 overlap by 1 nucleotides SMa1373 and SMa1375 are separated by 78 nucleotides
SMa1370: SMa1370 - ABC transporter ATP-binding protein, at 752,672 to 753,655
SMa1370
SMa1371: SMa1371 - ABC transporter ATP-binding protein, at 753,652 to 754,632
SMa1371
SMa1374: SMa1374 - ABC transporter permease, at 754,635 to 755,594
SMa1374
SMa1373: SMa1373 - ABC transporter permease, at 755,594 to 756,514
SMa1373
SMa1375: SMa1375 - ABC transporter substrate-binding protein, at 756,593 to 758,077
SMa1375
Position (kb) 754
755
756 Strain fitness (log2 ratio) -2
-1
0
1 at 753.656 kb on - strand at 753.820 kb on + strand, within SMa1371 at 753.884 kb on + strand, within SMa1371 at 753.885 kb on - strand, within SMa1371 at 753.947 kb on + strand, within SMa1371 at 753.947 kb on + strand, within SMa1371 at 753.948 kb on - strand, within SMa1371 at 753.948 kb on - strand, within SMa1371 at 753.948 kb on - strand, within SMa1371 at 753.948 kb on - strand, within SMa1371 at 753.948 kb on - strand, within SMa1371 at 753.948 kb on - strand, within SMa1371 at 754.072 kb on + strand, within SMa1371 at 754.073 kb on - strand, within SMa1371 at 754.817 kb on - strand, within SMa1374 at 754.817 kb on - strand, within SMa1374 at 754.887 kb on + strand, within SMa1374 at 755.023 kb on + strand, within SMa1374 at 755.071 kb on + strand, within SMa1374 at 755.157 kb on + strand, within SMa1374 at 755.157 kb on + strand, within SMa1374 at 755.157 kb on + strand, within SMa1374 at 755.157 kb on + strand, within SMa1374 at 755.157 kb on + strand, within SMa1374 at 755.158 kb on - strand, within SMa1374 at 755.346 kb on - strand, within SMa1374 at 755.434 kb on + strand, within SMa1374 at 755.435 kb on - strand, within SMa1374 at 755.435 kb on - strand, within SMa1374 at 755.819 kb on - strand, within SMa1373 at 755.819 kb on - strand, within SMa1373 at 755.846 kb on + strand, within SMa1373 at 755.851 kb on + strand, within SMa1373 at 755.852 kb on - strand, within SMa1373 at 755.866 kb on + strand, within SMa1373 at 755.866 kb on + strand, within SMa1373 at 755.907 kb on + strand, within SMa1373 at 755.907 kb on + strand, within SMa1373 at 755.907 kb on + strand, within SMa1373 at 755.908 kb on - strand, within SMa1373 at 755.983 kb on + strand, within SMa1373 at 755.984 kb on - strand, within SMa1373 at 756.514 kb on + strand at 756.514 kb on + strand at 756.514 kb on + strand at 756.514 kb on + strand at 756.515 kb on - strand at 756.515 kb on - strand at 756.573 kb on + strand at 756.574 kb on - strand at 756.574 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 753,656 - -0.5 753,820 + SMa1371 0.17 +0.1 753,884 + SMa1371 0.24 +1.3 753,885 - SMa1371 0.24 -0.3 753,947 + SMa1371 0.30 -0.1 753,947 + SMa1371 0.30 -0.5 753,948 - SMa1371 0.30 +1.1 753,948 - SMa1371 0.30 -1.2 753,948 - SMa1371 0.30 -2.2 753,948 - SMa1371 0.30 -0.3 753,948 - SMa1371 0.30 -2.5 753,948 - SMa1371 0.30 +0.2 754,072 + SMa1371 0.43 +0.5 754,073 - SMa1371 0.43 -0.9 754,817 - SMa1374 0.19 +0.7 754,817 - SMa1374 0.19 +1.1 754,887 + SMa1374 0.26 +0.4 755,023 + SMa1374 0.40 -1.4 755,071 + SMa1374 0.45 -0.4 755,157 + SMa1374 0.54 -0.1 755,157 + SMa1374 0.54 +1.0 755,157 + SMa1374 0.54 +1.5 755,157 + SMa1374 0.54 +0.2 755,157 + SMa1374 0.54 -0.6 755,158 - SMa1374 0.54 -0.0 755,346 - SMa1374 0.74 -1.1 755,434 + SMa1374 0.83 +0.8 755,435 - SMa1374 0.83 -1.0 755,435 - SMa1374 0.83 +0.8 755,819 - SMa1373 0.24 +0.6 755,819 - SMa1373 0.24 -0.1 755,846 + SMa1373 0.27 +0.1 755,851 + SMa1373 0.28 -0.1 755,852 - SMa1373 0.28 -0.1 755,866 + SMa1373 0.30 +0.1 755,866 + SMa1373 0.30 -0.8 755,907 + SMa1373 0.34 +0.6 755,907 + SMa1373 0.34 +0.8 755,907 + SMa1373 0.34 -0.2 755,908 - SMa1373 0.34 -0.6 755,983 + SMa1373 0.42 -0.5 755,984 - SMa1373 0.42 +1.2 756,514 + -1.8 756,514 + +0.9 756,514 + -0.3 756,514 + +0.0 756,515 - -2.0 756,515 - -0.8 756,573 + +1.3 756,574 - -0.1 756,574 - -0.6
Or see this region's nucleotide sequence