Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1084 and SMa1086 are separated by 179 nucleotides SMa1086 and SMa1087 are separated by 101 nucleotides SMa1087 and SMa1089 overlap by 4 nucleotides SMa1089 and SMa1091 overlap by 4 nucleotides SMa1091 and SMa1092 are separated by 223 nucleotides
SMa1084: SMa1084 - phosphoketolase, at 591,065 to 593,440
SMa1084
SMa1086: SMa1086 - hypothetical protein, at 593,620 to 594,294
SMa1086
SMa1087: SMa1087 - cation transport P-type ATPase, at 594,396 to 596,597
SMa1087
SMa1089: SMa1089 - hypothetical protein, at 596,594 to 596,797
SMa1089
SMa1091: SMa1091 - hypothetical protein, at 596,794 to 597,297
SMa1091
SMa1092: SMa1092 - hypothetical protein, at 597,521 to 598,030
SMa1092
Position (kb) 594
595
596
597 Strain fitness (log2 ratio) -2
-1
0
1
2 at 593.431 kb on + strand at 593.431 kb on + strand at 593.432 kb on - strand at 593.553 kb on + strand at 593.616 kb on - strand at 593.616 kb on - strand at 593.652 kb on + strand at 593.653 kb on - strand at 593.955 kb on + strand, within SMa1086 at 593.956 kb on - strand, within SMa1086 at 594.051 kb on + strand, within SMa1086 at 594.051 kb on + strand, within SMa1086 at 594.052 kb on - strand, within SMa1086 at 594.185 kb on - strand, within SMa1086 at 594.199 kb on + strand at 594.200 kb on - strand, within SMa1086 at 594.276 kb on + strand at 594.276 kb on + strand at 594.279 kb on + strand at 594.280 kb on - strand at 594.298 kb on - strand at 594.326 kb on - strand at 594.422 kb on + strand at 594.422 kb on + strand at 594.423 kb on - strand at 594.495 kb on + strand at 594.495 kb on + strand at 594.521 kb on - strand at 594.646 kb on + strand, within SMa1087 at 594.825 kb on - strand, within SMa1087 at 594.868 kb on - strand, within SMa1087 at 594.943 kb on - strand, within SMa1087 at 595.600 kb on + strand, within SMa1087 at 595.689 kb on + strand, within SMa1087 at 595.943 kb on - strand, within SMa1087 at 596.008 kb on + strand, within SMa1087 at 596.009 kb on - strand, within SMa1087 at 596.051 kb on - strand, within SMa1087 at 596.326 kb on + strand, within SMa1087 at 596.396 kb on + strand at 596.594 kb on - strand at 596.594 kb on - strand at 596.789 kb on - strand at 596.801 kb on - strand at 596.861 kb on - strand, within SMa1091 at 596.935 kb on + strand, within SMa1091 at 596.996 kb on + strand, within SMa1091 at 596.996 kb on + strand, within SMa1091 at 596.996 kb on + strand, within SMa1091 at 596.996 kb on + strand, within SMa1091 at 596.997 kb on - strand, within SMa1091 at 596.997 kb on - strand, within SMa1091 at 597.059 kb on + strand, within SMa1091 at 597.169 kb on + strand, within SMa1091 at 597.227 kb on - strand, within SMa1091 at 597.295 kb on + strand at 597.295 kb on + strand at 597.421 kb on + strand at 597.422 kb on - strand at 597.422 kb on - strand at 597.445 kb on - strand at 597.522 kb on + strand at 597.523 kb on - strand at 597.523 kb on - strand at 597.523 kb on - strand at 597.523 kb on - strand at 597.577 kb on + strand, within SMa1092
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 593,431 + +0.1 593,431 + +2.3 593,432 - -0.6 593,553 + +1.5 593,616 - -0.6 593,616 - -0.1 593,652 + -1.2 593,653 - +2.6 593,955 + SMa1086 0.50 -0.7 593,956 - SMa1086 0.50 -1.1 594,051 + SMa1086 0.64 +0.3 594,051 + SMa1086 0.64 +0.1 594,052 - SMa1086 0.64 +0.5 594,185 - SMa1086 0.84 -0.2 594,199 + +1.2 594,200 - SMa1086 0.86 -2.3 594,276 + -2.2 594,276 + +1.0 594,279 + -0.5 594,280 - -1.1 594,298 - -0.7 594,326 - +0.1 594,422 + +0.6 594,422 + +0.5 594,423 - +0.7 594,495 + -0.6 594,495 + -2.3 594,521 - -0.2 594,646 + SMa1087 0.11 +0.4 594,825 - SMa1087 0.19 -1.2 594,868 - SMa1087 0.21 +1.1 594,943 - SMa1087 0.25 +0.6 595,600 + SMa1087 0.55 +0.1 595,689 + SMa1087 0.59 +1.0 595,943 - SMa1087 0.70 -0.3 596,008 + SMa1087 0.73 +0.3 596,009 - SMa1087 0.73 -0.0 596,051 - SMa1087 0.75 -0.1 596,326 + SMa1087 0.88 +0.1 596,396 + -1.4 596,594 - -0.7 596,594 - +0.4 596,789 - +0.8 596,801 - -0.4 596,861 - SMa1091 0.13 +0.1 596,935 + SMa1091 0.28 -2.5 596,996 + SMa1091 0.40 -0.2 596,996 + SMa1091 0.40 -2.3 596,996 + SMa1091 0.40 -1.5 596,996 + SMa1091 0.40 +1.4 596,997 - SMa1091 0.40 +0.6 596,997 - SMa1091 0.40 +0.7 597,059 + SMa1091 0.53 -0.3 597,169 + SMa1091 0.74 +0.2 597,227 - SMa1091 0.86 -1.1 597,295 + +0.8 597,295 + +0.7 597,421 + -1.3 597,422 - -0.0 597,422 - -1.6 597,445 - -1.9 597,522 + +0.7 597,523 - +0.5 597,523 - -2.0 597,523 - -0.0 597,523 - -0.8 597,577 + SMa1092 0.11 -1.0
Or see this region's nucleotide sequence