Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1077 and SMa1078 are separated by 29 nucleotides SMa1078 and SMa1079 are separated by 5 nucleotides SMa1079 and SMa1081 are separated by 21 nucleotides SMa1081 and SMa1082 are separated by 281 nucleotides SMa1082 and SMa1084 are separated by 94 nucleotides
SMa1077: SMa1077 - Nex18 symbiotically induced protein, at 588,601 to 589,083
SMa1077
SMa1078: SMa1078 - hypothetical protein, at 589,113 to 589,337
SMa1078
SMa1079: SMa1079 - TspO/MBR family protein, at 589,343 to 589,885
SMa1079
SMa1081: SMa1081 - hypothetical protein, at 589,907 to 590,068
SMa1081
SMa1082: SMa1082 - hypothetical protein, at 590,350 to 590,970
SMa1082
SMa1084: SMa1084 - phosphoketolase, at 591,065 to 593,440
SMa1084
Position (kb) 589
590
591 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 589.188 kb on - strand, within SMa1078 at 589.245 kb on + strand, within SMa1078 at 589.246 kb on - strand, within SMa1078 at 589.246 kb on - strand, within SMa1078 at 589.246 kb on - strand, within SMa1078 at 589.256 kb on - strand, within SMa1078 at 589.342 kb on + strand at 589.468 kb on + strand, within SMa1079 at 589.527 kb on + strand, within SMa1079 at 589.528 kb on - strand, within SMa1079 at 589.553 kb on + strand, within SMa1079 at 589.553 kb on + strand, within SMa1079 at 589.554 kb on - strand, within SMa1079 at 589.631 kb on + strand, within SMa1079 at 589.631 kb on + strand, within SMa1079 at 589.632 kb on - strand, within SMa1079 at 589.714 kb on + strand, within SMa1079 at 589.715 kb on - strand, within SMa1079 at 589.797 kb on - strand, within SMa1079 at 589.986 kb on + strand, within SMa1081 at 590.031 kb on - strand, within SMa1081 at 590.031 kb on - strand, within SMa1081 at 590.113 kb on + strand at 590.114 kb on - strand at 590.114 kb on - strand at 590.172 kb on + strand at 590.172 kb on + strand at 590.173 kb on - strand at 590.173 kb on - strand at 590.352 kb on - strand at 590.352 kb on - strand at 590.352 kb on - strand at 590.377 kb on + strand at 590.377 kb on + strand at 590.378 kb on - strand at 590.423 kb on + strand, within SMa1082 at 590.424 kb on - strand, within SMa1082 at 590.456 kb on - strand, within SMa1082 at 590.571 kb on + strand, within SMa1082 at 590.583 kb on + strand, within SMa1082 at 590.583 kb on + strand, within SMa1082 at 590.584 kb on - strand, within SMa1082 at 590.584 kb on - strand, within SMa1082 at 590.584 kb on - strand, within SMa1082 at 590.802 kb on + strand, within SMa1082 at 590.802 kb on + strand, within SMa1082 at 590.928 kb on + strand at 591.012 kb on + strand at 591.012 kb on + strand at 591.032 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 589,188 - SMa1078 0.33 +1.4 589,245 + SMa1078 0.59 -2.2 589,246 - SMa1078 0.59 -0.1 589,246 - SMa1078 0.59 +0.0 589,246 - SMa1078 0.59 -0.6 589,256 - SMa1078 0.64 -1.1 589,342 + +0.1 589,468 + SMa1079 0.23 -0.5 589,527 + SMa1079 0.34 -0.2 589,528 - SMa1079 0.34 -0.1 589,553 + SMa1079 0.39 -0.3 589,553 + SMa1079 0.39 -0.4 589,554 - SMa1079 0.39 -3.4 589,631 + SMa1079 0.53 +1.2 589,631 + SMa1079 0.53 +1.8 589,632 - SMa1079 0.53 -0.4 589,714 + SMa1079 0.68 +0.7 589,715 - SMa1079 0.69 -0.0 589,797 - SMa1079 0.84 +0.0 589,986 + SMa1081 0.49 +0.0 590,031 - SMa1081 0.77 -0.4 590,031 - SMa1081 0.77 +0.2 590,113 + -0.4 590,114 - +0.6 590,114 - -2.6 590,172 + +0.8 590,172 + +0.2 590,173 - -1.2 590,173 - -0.3 590,352 - +0.3 590,352 - +0.0 590,352 - -1.1 590,377 + -1.7 590,377 + -1.7 590,378 - +0.4 590,423 + SMa1082 0.12 +0.3 590,424 - SMa1082 0.12 +0.1 590,456 - SMa1082 0.17 +1.5 590,571 + SMa1082 0.36 -2.5 590,583 + SMa1082 0.38 -0.7 590,583 + SMa1082 0.38 +0.6 590,584 - SMa1082 0.38 -0.7 590,584 - SMa1082 0.38 -0.1 590,584 - SMa1082 0.38 -1.0 590,802 + SMa1082 0.73 -0.1 590,802 + SMa1082 0.73 -2.6 590,928 + +0.1 591,012 + -0.3 591,012 + -2.0 591,032 - +0.0
Or see this region's nucleotide sequence