Strain Fitness in Sinorhizobium meliloti 1021 around SMa1076

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1073 and SMa1076 are separated by 576 nucleotidesSMa1076 and SMa1077 are separated by 161 nucleotidesSMa1077 and SMa1078 are separated by 29 nucleotidesSMa1078 and SMa1079 are separated by 5 nucleotides SMa1073: SMa1073 - TRm23b IS ATP-binding protein, at 586,541 to 587,278 SMa1073 SMa1076: SMa1076 - hypothetical protein, at 587,855 to 588,439 SMa1076 SMa1077: SMa1077 - Nex18 symbiotically induced protein, at 588,601 to 589,083 SMa1077 SMa1078: SMa1078 - hypothetical protein, at 589,113 to 589,337 SMa1078 SMa1079: SMa1079 - TspO/MBR family protein, at 589,343 to 589,885 SMa1079 Position (kb) 587 588 589Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 587.131 kb on + strand, within SMa1073at 587.408 kb on + strandat 587.408 kb on + strandat 587.408 kb on + strandat 587.408 kb on + strandat 587.408 kb on + strandat 587.408 kb on + strandat 587.409 kb on - strandat 587.409 kb on - strandat 587.409 kb on - strandat 587.409 kb on - strandat 587.409 kb on - strandat 587.532 kb on + strandat 587.549 kb on - strandat 587.627 kb on + strandat 587.627 kb on + strandat 587.627 kb on + strandat 587.628 kb on - strandat 587.628 kb on - strandat 587.628 kb on - strandat 587.628 kb on - strandat 587.631 kb on + strandat 587.631 kb on + strandat 587.631 kb on + strandat 587.631 kb on + strandat 587.631 kb on + strandat 587.632 kb on - strandat 587.632 kb on - strandat 587.856 kb on + strandat 587.857 kb on - strandat 587.866 kb on + strandat 587.875 kb on + strandat 587.876 kb on - strandat 587.907 kb on + strandat 587.908 kb on - strandat 587.911 kb on + strandat 587.984 kb on + strand, within SMa1076at 587.987 kb on - strand, within SMa1076at 588.007 kb on - strand, within SMa1076at 588.073 kb on - strand, within SMa1076at 588.230 kb on + strand, within SMa1076at 588.231 kb on - strand, within SMa1076at 588.331 kb on + strand, within SMa1076at 588.332 kb on - strand, within SMa1076at 588.382 kb on + strandat 588.382 kb on + strandat 588.385 kb on + strandat 588.385 kb on + strandat 588.385 kb on + strandat 588.385 kb on + strandat 588.386 kb on - strandat 588.386 kb on - strandat 588.419 kb on - strandat 588.641 kb on + strandat 588.641 kb on + strandat 588.881 kb on - strand, within SMa1077at 588.881 kb on - strand, within SMa1077at 589.188 kb on - strand, within SMa1078at 589.245 kb on + strand, within SMa1078at 589.246 kb on - strand, within SMa1078at 589.246 kb on - strand, within SMa1078at 589.246 kb on - strand, within SMa1078at 589.256 kb on - strand, within SMa1078at 589.342 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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587,131 + SMa1073 0.80 +0.4
587,408 + -0.1
587,408 + -0.4
587,408 + -0.3
587,408 + +2.7
587,408 + -0.3
587,408 + +0.7
587,409 - +0.3
587,409 - +0.8
587,409 - -0.1
587,409 - -2.2
587,409 - -0.2
587,532 + -0.4
587,549 - +2.0
587,627 + -1.4
587,627 + -1.8
587,627 + +1.0
587,628 - +1.2
587,628 - -0.7
587,628 - -0.4
587,628 - +0.1
587,631 + +1.0
587,631 + +0.0
587,631 + +0.0
587,631 + +0.7
587,631 + +1.5
587,632 - -0.1
587,632 - -0.9
587,856 + +0.6
587,857 - +1.2
587,866 + +0.2
587,875 + +0.3
587,876 - +0.8
587,907 + -1.2
587,908 - +0.6
587,911 + +1.6
587,984 + SMa1076 0.22 -1.1
587,987 - SMa1076 0.23 +1.0
588,007 - SMa1076 0.26 -0.6
588,073 - SMa1076 0.37 -1.3
588,230 + SMa1076 0.64 -1.8
588,231 - SMa1076 0.64 -0.8
588,331 + SMa1076 0.81 +0.8
588,332 - SMa1076 0.82 +0.4
588,382 + +0.4
588,382 + -2.3
588,385 + -0.6
588,385 + -2.9
588,385 + -1.3
588,385 + +0.4
588,386 - -2.2
588,386 - -0.4
588,419 - -3.1
588,641 + -0.4
588,641 + -1.9
588,881 - SMa1077 0.58 +0.6
588,881 - SMa1077 0.58 +0.7
589,188 - SMa1078 0.33 +1.4
589,245 + SMa1078 0.59 -2.2
589,246 - SMa1078 0.59 -0.1
589,246 - SMa1078 0.59 +0.0
589,246 - SMa1078 0.59 -0.6
589,256 - SMa1078 0.64 -1.1
589,342 + +0.1

Or see this region's nucleotide sequence