Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0955 and SMa0956 are separated by 107 nucleotides SMa0956 and SMa0958 overlap by 4 nucleotides
SMa0955: SMa0955 - GntR family transcriptional regulator, at 534,018 to 534,710
SMa0955
SMa0956: SMa0956 - AtrB glutamate-1-semialdehyde 2,1-aminomutase, at 534,818 to 536,179
SMa0956
SMa0958: SMa0958 - acetolactate synthase catalytic subunit, at 536,176 to 537,888
SMa0958
Position (kb) 534
535
536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 533.924 kb on - strand at 534.231 kb on + strand, within SMa0955 at 534.567 kb on + strand, within SMa0955 at 534.568 kb on - strand, within SMa0955 at 534.709 kb on - strand at 534.709 kb on - strand at 534.817 kb on + strand at 534.818 kb on - strand at 534.879 kb on + strand at 534.879 kb on + strand at 534.880 kb on - strand at 534.900 kb on + strand at 534.901 kb on - strand at 534.904 kb on + strand at 534.953 kb on + strand at 534.977 kb on + strand, within SMa0956 at 535.092 kb on + strand, within SMa0956 at 535.254 kb on + strand, within SMa0956 at 535.255 kb on - strand, within SMa0956 at 535.274 kb on + strand, within SMa0956 at 535.324 kb on + strand, within SMa0956 at 535.342 kb on + strand, within SMa0956 at 535.343 kb on - strand, within SMa0956 at 535.365 kb on - strand, within SMa0956 at 535.365 kb on - strand, within SMa0956 at 535.365 kb on - strand, within SMa0956 at 535.365 kb on - strand, within SMa0956 at 535.555 kb on + strand, within SMa0956 at 535.556 kb on - strand, within SMa0956 at 535.556 kb on - strand, within SMa0956 at 535.556 kb on - strand, within SMa0956 at 535.556 kb on - strand, within SMa0956 at 535.559 kb on + strand, within SMa0956 at 535.607 kb on + strand, within SMa0956 at 535.668 kb on + strand, within SMa0956 at 535.695 kb on + strand, within SMa0956 at 535.713 kb on + strand, within SMa0956 at 535.714 kb on - strand, within SMa0956 at 536.056 kb on - strand at 536.056 kb on - strand at 536.060 kb on + strand at 536.114 kb on - strand at 536.214 kb on + strand at 536.216 kb on + strand at 536.357 kb on + strand, within SMa0958 at 536.599 kb on + strand, within SMa0958 at 536.599 kb on + strand, within SMa0958 at 536.599 kb on + strand, within SMa0958 at 536.600 kb on - strand, within SMa0958 at 536.720 kb on + strand, within SMa0958 at 536.927 kb on - strand, within SMa0958 at 536.927 kb on - strand, within SMa0958 at 536.927 kb on - strand, within SMa0958 at 536.992 kb on + strand, within SMa0958 at 536.992 kb on + strand, within SMa0958 at 536.993 kb on - strand, within SMa0958 at 536.993 kb on - strand, within SMa0958 at 537.133 kb on + strand, within SMa0958 at 537.134 kb on - strand, within SMa0958 at 537.134 kb on - strand, within SMa0958 at 537.134 kb on - strand, within SMa0958
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 533,924 - -0.8 534,231 + SMa0955 0.31 +1.8 534,567 + SMa0955 0.79 -1.1 534,568 - SMa0955 0.79 -3.0 534,709 - +0.2 534,709 - +0.9 534,817 + -0.9 534,818 - -1.6 534,879 + -0.2 534,879 + -2.7 534,880 - -2.3 534,900 + +0.0 534,901 - +3.3 534,904 + +0.0 534,953 + +0.5 534,977 + SMa0956 0.12 -0.2 535,092 + SMa0956 0.20 -0.3 535,254 + SMa0956 0.32 -2.0 535,255 - SMa0956 0.32 -1.9 535,274 + SMa0956 0.33 +1.5 535,324 + SMa0956 0.37 +0.2 535,342 + SMa0956 0.38 -1.6 535,343 - SMa0956 0.39 +0.7 535,365 - SMa0956 0.40 +0.3 535,365 - SMa0956 0.40 +0.1 535,365 - SMa0956 0.40 -1.6 535,365 - SMa0956 0.40 -1.0 535,555 + SMa0956 0.54 -2.2 535,556 - SMa0956 0.54 -0.3 535,556 - SMa0956 0.54 -3.5 535,556 - SMa0956 0.54 -1.0 535,556 - SMa0956 0.54 +0.1 535,559 + SMa0956 0.54 -0.2 535,607 + SMa0956 0.58 -0.1 535,668 + SMa0956 0.62 -0.8 535,695 + SMa0956 0.64 -0.6 535,713 + SMa0956 0.66 +4.3 535,714 - SMa0956 0.66 +0.6 536,056 - +0.4 536,056 - -0.2 536,060 + +0.1 536,114 - +2.8 536,214 + -1.0 536,216 + +0.6 536,357 + SMa0958 0.11 +1.8 536,599 + SMa0958 0.25 -0.2 536,599 + SMa0958 0.25 +0.5 536,599 + SMa0958 0.25 -1.8 536,600 - SMa0958 0.25 +0.7 536,720 + SMa0958 0.32 -0.5 536,927 - SMa0958 0.44 -0.0 536,927 - SMa0958 0.44 +0.8 536,927 - SMa0958 0.44 +0.4 536,992 + SMa0958 0.48 -0.0 536,992 + SMa0958 0.48 -1.0 536,993 - SMa0958 0.48 -0.2 536,993 - SMa0958 0.48 +0.4 537,133 + SMa0958 0.56 +0.2 537,134 - SMa0958 0.56 -0.8 537,134 - SMa0958 0.56 -1.3 537,134 - SMa0958 0.56 -1.1
Or see this region's nucleotide sequence