Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0241 and SMa0244 are separated by 194 nucleotides SMa0244 and SMa0246 are separated by 14 nucleotides SMa0246 and SMa0247 are separated by 170 nucleotides
SMa0241: SMa0241 - epimerase, at 133,771 to 134,754
SMa0241
SMa0244: SMa0244 - Dehydrogenase, FAD-dependent, at 134,949 to 136,394
SMa0244
SMa0246: SMa0246 - GntR family transcriptional regulator, at 136,409 to 137,119
SMa0246
SMa0247: SMa0247 - 2-dehydro-3-deoxy-D-arabinonate dehydratase, 2,4-dioxopentanoate forming <small>(from data)</small>, at 137,290 to 138,486
SMa0247
Position (kb) 134
135
136
137 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 134.261 kb on + strand, within SMa0241 at 134.262 kb on - strand, within SMa0241 at 134.303 kb on + strand, within SMa0241 at 134.304 kb on - strand, within SMa0241 at 134.319 kb on + strand, within SMa0241 at 134.320 kb on - strand, within SMa0241 at 134.320 kb on - strand, within SMa0241 at 134.327 kb on + strand, within SMa0241 at 134.328 kb on - strand, within SMa0241 at 134.402 kb on + strand, within SMa0241 at 134.402 kb on + strand, within SMa0241 at 134.638 kb on + strand, within SMa0241 at 134.639 kb on - strand, within SMa0241 at 134.639 kb on - strand, within SMa0241 at 134.749 kb on - strand at 134.840 kb on + strand at 134.864 kb on + strand at 134.865 kb on - strand at 134.968 kb on + strand at 135.030 kb on - strand at 135.643 kb on + strand, within SMa0244 at 135.823 kb on - strand, within SMa0244 at 136.010 kb on + strand, within SMa0244 at 136.010 kb on + strand, within SMa0244 at 136.057 kb on + strand, within SMa0244 at 136.113 kb on + strand, within SMa0244 at 136.113 kb on + strand, within SMa0244 at 136.114 kb on - strand, within SMa0244 at 136.197 kb on + strand, within SMa0244 at 136.197 kb on + strand, within SMa0244 at 136.197 kb on + strand, within SMa0244 at 136.502 kb on - strand, within SMa0246 at 136.582 kb on + strand, within SMa0246 at 136.584 kb on + strand, within SMa0246 at 136.584 kb on + strand, within SMa0246 at 136.584 kb on + strand, within SMa0246 at 136.584 kb on + strand, within SMa0246 at 136.584 kb on + strand, within SMa0246 at 136.584 kb on + strand, within SMa0246 at 136.584 kb on + strand, within SMa0246 at 136.729 kb on + strand, within SMa0246 at 136.729 kb on + strand, within SMa0246 at 136.774 kb on + strand, within SMa0246 at 136.774 kb on + strand, within SMa0246 at 136.775 kb on - strand, within SMa0246 at 136.775 kb on - strand, within SMa0246 at 136.904 kb on + strand, within SMa0246 at 136.977 kb on + strand, within SMa0246 at 137.117 kb on + strand at 137.188 kb on - strand at 137.192 kb on - strand at 137.202 kb on + strand at 137.202 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 134,261 + SMa0241 0.50 +0.3 134,262 - SMa0241 0.50 -0.2 134,303 + SMa0241 0.54 -0.6 134,304 - SMa0241 0.54 -0.7 134,319 + SMa0241 0.56 -0.4 134,320 - SMa0241 0.56 +0.2 134,320 - SMa0241 0.56 -0.2 134,327 + SMa0241 0.57 -2.9 134,328 - SMa0241 0.57 -0.7 134,402 + SMa0241 0.64 +0.4 134,402 + SMa0241 0.64 +0.1 134,638 + SMa0241 0.88 -1.4 134,639 - SMa0241 0.88 -0.4 134,639 - SMa0241 0.88 -0.1 134,749 - +1.4 134,840 + +1.5 134,864 + -0.5 134,865 - -0.5 134,968 + +1.2 135,030 - -0.7 135,643 + SMa0244 0.48 -1.9 135,823 - SMa0244 0.60 +0.4 136,010 + SMa0244 0.73 -1.8 136,010 + SMa0244 0.73 -0.4 136,057 + SMa0244 0.77 -0.3 136,113 + SMa0244 0.80 +0.9 136,113 + SMa0244 0.80 -0.1 136,114 - SMa0244 0.81 +0.6 136,197 + SMa0244 0.86 -2.4 136,197 + SMa0244 0.86 -1.6 136,197 + SMa0244 0.86 +1.2 136,502 - SMa0246 0.13 +0.2 136,582 + SMa0246 0.24 -2.4 136,584 + SMa0246 0.25 -0.5 136,584 + SMa0246 0.25 -0.6 136,584 + SMa0246 0.25 -0.1 136,584 + SMa0246 0.25 +0.0 136,584 + SMa0246 0.25 -0.1 136,584 + SMa0246 0.25 +0.9 136,584 + SMa0246 0.25 -1.4 136,729 + SMa0246 0.45 +0.5 136,729 + SMa0246 0.45 -4.2 136,774 + SMa0246 0.51 -1.1 136,774 + SMa0246 0.51 -0.5 136,775 - SMa0246 0.51 -0.4 136,775 - SMa0246 0.51 -0.7 136,904 + SMa0246 0.70 -0.2 136,977 + SMa0246 0.80 -2.9 137,117 + -0.2 137,188 - +1.2 137,192 - +0.7 137,202 + +0.5 137,202 + -0.3
Or see this region's nucleotide sequence