Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0197 and SMa0198 overlap by 4 nucleotides SMa0198 and SMa0199 overlap by 4 nucleotides SMa0199 and SMa0203 are separated by 58 nucleotides
SMa0197: SMa0197 - ABC transporter permease, at 107,878 to 108,825
SMa0197
SMa0198: SMa0198 - ABC transporter permease, at 108,822 to 109,769
SMa0198
SMa0199: SMa0199 - ABC transporter ATP-binding protein, at 109,766 to 111,229
SMa0199
SMa0203: SMa0203 - ABC transporter substrate-binding protein, at 111,288 to 112,304
SMa0203
Position (kb) 109
110
111
112 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 108.813 kb on + strand at 109.116 kb on + strand, within SMa0198 at 109.117 kb on - strand, within SMa0198 at 109.145 kb on - strand, within SMa0198 at 109.272 kb on + strand, within SMa0198 at 109.273 kb on - strand, within SMa0198 at 109.465 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.664 kb on - strand, within SMa0198 at 109.664 kb on - strand, within SMa0198 at 109.664 kb on - strand, within SMa0198 at 109.664 kb on - strand, within SMa0198 at 109.795 kb on + strand at 109.795 kb on + strand at 109.796 kb on - strand at 109.796 kb on - strand at 109.796 kb on - strand at 109.796 kb on - strand at 109.860 kb on + strand at 109.861 kb on - strand at 109.861 kb on - strand at 109.861 kb on - strand at 109.861 kb on - strand at 109.861 kb on - strand at 109.902 kb on + strand at 109.950 kb on + strand, within SMa0199 at 109.950 kb on + strand, within SMa0199 at 109.951 kb on - strand, within SMa0199 at 110.134 kb on + strand, within SMa0199 at 110.396 kb on - strand, within SMa0199 at 110.475 kb on - strand, within SMa0199 at 110.564 kb on - strand, within SMa0199 at 110.596 kb on + strand, within SMa0199 at 110.596 kb on + strand, within SMa0199 at 110.597 kb on - strand, within SMa0199 at 110.894 kb on + strand, within SMa0199 at 110.992 kb on - strand, within SMa0199 at 111.088 kb on + strand at 111.088 kb on + strand at 111.088 kb on + strand at 111.088 kb on + strand at 111.089 kb on - strand at 111.204 kb on - strand at 111.214 kb on + strand at 111.215 kb on - strand at 111.259 kb on + strand at 111.363 kb on - strand at 111.396 kb on + strand, within SMa0203 at 111.397 kb on - strand, within SMa0203 at 111.430 kb on - strand, within SMa0203 at 111.430 kb on - strand, within SMa0203 at 111.625 kb on + strand, within SMa0203 at 111.831 kb on + strand, within SMa0203 at 111.831 kb on + strand, within SMa0203 at 111.865 kb on + strand, within SMa0203 at 112.034 kb on - strand, within SMa0203 at 112.034 kb on - strand, within SMa0203 at 112.195 kb on + strand, within SMa0203 at 112.195 kb on + strand, within SMa0203 at 112.195 kb on + strand, within SMa0203 at 112.196 kb on - strand, within SMa0203 at 112.196 kb on - strand, within SMa0203 at 112.196 kb on - strand, within SMa0203 at 112.196 kb on - strand, within SMa0203 at 112.196 kb on - strand, within SMa0203 at 112.196 kb on - strand, within SMa0203
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 108,813 + +0.0 109,116 + SMa0198 0.31 +0.0 109,117 - SMa0198 0.31 -0.2 109,145 - SMa0198 0.34 +0.5 109,272 + SMa0198 0.47 -0.5 109,273 - SMa0198 0.48 +0.2 109,465 + SMa0198 0.68 -4.4 109,663 + SMa0198 0.89 +0.2 109,663 + SMa0198 0.89 -0.4 109,663 + SMa0198 0.89 -1.4 109,663 + SMa0198 0.89 -0.3 109,663 + SMa0198 0.89 -0.7 109,663 + SMa0198 0.89 +0.6 109,663 + SMa0198 0.89 +0.2 109,664 - SMa0198 0.89 +0.3 109,664 - SMa0198 0.89 -3.4 109,664 - SMa0198 0.89 +0.2 109,664 - SMa0198 0.89 -0.7 109,795 + +0.3 109,795 + +0.2 109,796 - -0.4 109,796 - -0.8 109,796 - +0.3 109,796 - -0.2 109,860 + +1.3 109,861 - -0.6 109,861 - -1.8 109,861 - -0.0 109,861 - +0.4 109,861 - +0.2 109,902 + -0.3 109,950 + SMa0199 0.13 +0.1 109,950 + SMa0199 0.13 -0.4 109,951 - SMa0199 0.13 -0.7 110,134 + SMa0199 0.25 +0.3 110,396 - SMa0199 0.43 -0.4 110,475 - SMa0199 0.48 +0.5 110,564 - SMa0199 0.55 -0.8 110,596 + SMa0199 0.57 -0.5 110,596 + SMa0199 0.57 -0.3 110,597 - SMa0199 0.57 +1.2 110,894 + SMa0199 0.77 -0.4 110,992 - SMa0199 0.84 -1.8 111,088 + +0.6 111,088 + +1.1 111,088 + +0.8 111,088 + -0.5 111,089 - -0.3 111,204 - -0.1 111,214 + +0.1 111,215 - +0.1 111,259 + -0.3 111,363 - -0.8 111,396 + SMa0203 0.11 +0.3 111,397 - SMa0203 0.11 -1.4 111,430 - SMa0203 0.14 -0.5 111,430 - SMa0203 0.14 +0.6 111,625 + SMa0203 0.33 +1.4 111,831 + SMa0203 0.53 +0.1 111,831 + SMa0203 0.53 -1.3 111,865 + SMa0203 0.57 -2.6 112,034 - SMa0203 0.73 -0.7 112,034 - SMa0203 0.73 -0.5 112,195 + SMa0203 0.89 -1.2 112,195 + SMa0203 0.89 +0.5 112,195 + SMa0203 0.89 +0.0 112,196 - SMa0203 0.89 -0.7 112,196 - SMa0203 0.89 -0.2 112,196 - SMa0203 0.89 -0.5 112,196 - SMa0203 0.89 -1.0 112,196 - SMa0203 0.89 +0.7 112,196 - SMa0203 0.89 +2.0
Or see this region's nucleotide sequence