Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21551 and SM_b21552 are separated by 168 nucleotides SM_b21552 and SM_b21554 are separated by 202 nucleotides
SM_b21551: SM_b21551 - hypothetical protein, at 1,090,398 to 1,091,324
_b21551
SM_b21552: SM_b21552 - aminoglycoside 6'-N-acetyltransferase, amikacin resistance protein, at 1,091,493 to 1,091,996
_b21552
SM_b21554: SM_b21554 - hypothetical protein, at 1,092,199 to 1,092,741
_b21554
Position (kb)
1091
1092 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1090.601 kb on - strand, within SM_b21551 at 1091.322 kb on + strand at 1091.323 kb on - strand at 1091.328 kb on - strand at 1091.333 kb on + strand at 1091.333 kb on + strand at 1091.484 kb on + strand at 1091.485 kb on - strand at 1091.552 kb on + strand, within SM_b21552 at 1091.552 kb on + strand, within SM_b21552 at 1091.561 kb on + strand, within SM_b21552 at 1091.561 kb on + strand, within SM_b21552 at 1091.561 kb on + strand, within SM_b21552 at 1091.575 kb on - strand, within SM_b21552 at 1091.616 kb on + strand, within SM_b21552 at 1091.659 kb on + strand, within SM_b21552 at 1091.659 kb on + strand, within SM_b21552 at 1091.659 kb on + strand, within SM_b21552 at 1091.667 kb on + strand, within SM_b21552 at 1091.669 kb on + strand, within SM_b21552 at 1091.670 kb on - strand, within SM_b21552 at 1091.670 kb on - strand, within SM_b21552 at 1091.715 kb on + strand, within SM_b21552 at 1091.715 kb on + strand, within SM_b21552 at 1091.737 kb on + strand, within SM_b21552 at 1091.737 kb on + strand, within SM_b21552 at 1091.738 kb on - strand, within SM_b21552 at 1091.767 kb on + strand, within SM_b21552 at 1091.767 kb on + strand, within SM_b21552 at 1091.768 kb on - strand, within SM_b21552 at 1091.768 kb on - strand, within SM_b21552 at 1091.768 kb on - strand, within SM_b21552 at 1091.768 kb on - strand, within SM_b21552 at 1091.771 kb on + strand, within SM_b21552 at 1091.813 kb on + strand, within SM_b21552 at 1091.813 kb on + strand, within SM_b21552 at 1091.813 kb on + strand, within SM_b21552 at 1091.826 kb on + strand, within SM_b21552 at 1091.826 kb on + strand, within SM_b21552 at 1091.826 kb on + strand, within SM_b21552 at 1091.826 kb on + strand, within SM_b21552 at 1091.826 kb on + strand, within SM_b21552 at 1091.827 kb on - strand, within SM_b21552 at 1091.827 kb on - strand at 1091.827 kb on - strand, within SM_b21552 at 1091.827 kb on - strand, within SM_b21552 at 1091.882 kb on + strand, within SM_b21552 at 1091.896 kb on + strand, within SM_b21552 at 1091.897 kb on - strand at 1091.900 kb on + strand, within SM_b21552 at 1091.971 kb on + strand at 1091.972 kb on - strand at 1091.972 kb on - strand at 1091.972 kb on - strand at 1091.994 kb on + strand at 1091.995 kb on - strand at 1092.010 kb on + strand at 1092.010 kb on + strand at 1092.109 kb on + strand at 1092.152 kb on + strand at 1092.153 kb on - strand at 1092.218 kb on + strand at 1092.219 kb on - strand at 1092.251 kb on + strand at 1092.251 kb on + strand at 1092.252 kb on - strand at 1092.374 kb on + strand, within SM_b21554 at 1092.375 kb on - strand, within SM_b21554 at 1092.375 kb on - strand, within SM_b21554 at 1092.424 kb on + strand, within SM_b21554 at 1092.488 kb on + strand, within SM_b21554 at 1092.601 kb on + strand, within SM_b21554 at 1092.620 kb on + strand, within SM_b21554 at 1092.620 kb on + strand, within SM_b21554 at 1092.620 kb on + strand, within SM_b21554 at 1092.621 kb on - strand, within SM_b21554 at 1092.628 kb on - strand, within SM_b21554 at 1092.817 kb on + strand at 1092.849 kb on + strand at 1092.850 kb on - strand at 1092.983 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,090,601 - SM_b21551 0.22 -1.7 1,091,322 + -1.2 1,091,323 - -0.4 1,091,328 - -0.2 1,091,333 + -0.2 1,091,333 + -1.5 1,091,484 + +0.2 1,091,485 - +0.2 1,091,552 + SM_b21552 0.12 +0.9 1,091,552 + SM_b21552 0.12 +0.7 1,091,561 + SM_b21552 0.13 +0.3 1,091,561 + SM_b21552 0.13 +1.5 1,091,561 + SM_b21552 0.13 -1.5 1,091,575 - SM_b21552 0.16 +1.1 1,091,616 + SM_b21552 0.24 +0.5 1,091,659 + SM_b21552 0.33 +0.5 1,091,659 + SM_b21552 0.33 +0.3 1,091,659 + SM_b21552 0.33 -0.7 1,091,667 + SM_b21552 0.35 -0.5 1,091,669 + SM_b21552 0.35 -0.8 1,091,670 - SM_b21552 0.35 -0.6 1,091,670 - SM_b21552 0.35 -3.4 1,091,715 + SM_b21552 0.44 +0.3 1,091,715 + SM_b21552 0.44 +0.6 1,091,737 + SM_b21552 0.48 -0.5 1,091,737 + SM_b21552 0.48 -4.5 1,091,738 - SM_b21552 0.49 +0.9 1,091,767 + SM_b21552 0.54 +0.8 1,091,767 + SM_b21552 0.54 +1.3 1,091,768 - SM_b21552 0.55 -1.9 1,091,768 - SM_b21552 0.55 +0.6 1,091,768 - SM_b21552 0.55 -0.4 1,091,768 - SM_b21552 0.55 -1.0 1,091,771 + SM_b21552 0.55 +0.7 1,091,813 + SM_b21552 0.63 +0.3 1,091,813 + SM_b21552 0.63 +0.1 1,091,813 + SM_b21552 0.63 +1.1 1,091,826 + SM_b21552 0.66 +0.4 1,091,826 + SM_b21552 0.66 -1.8 1,091,826 + SM_b21552 0.66 -1.0 1,091,826 + SM_b21552 0.66 +1.5 1,091,826 + SM_b21552 0.66 +1.3 1,091,827 - SM_b21552 0.66 -0.6 1,091,827 - -0.5 1,091,827 - SM_b21552 0.66 +1.2 1,091,827 - SM_b21552 0.66 -0.5 1,091,882 + SM_b21552 0.77 +0.7 1,091,896 + SM_b21552 0.80 +2.4 1,091,897 - +0.5 1,091,900 + SM_b21552 0.81 +3.1 1,091,971 + -1.3 1,091,972 - -0.1 1,091,972 - +0.8 1,091,972 - +0.1 1,091,994 + +0.7 1,091,995 - -0.2 1,092,010 + -2.0 1,092,010 + -0.5 1,092,109 + -1.7 1,092,152 + +0.1 1,092,153 - +0.9 1,092,218 + -0.5 1,092,219 - -2.2 1,092,251 + +0.2 1,092,251 + +0.9 1,092,252 - -1.1 1,092,374 + SM_b21554 0.32 +1.3 1,092,375 - SM_b21554 0.32 +0.2 1,092,375 - SM_b21554 0.32 -0.9 1,092,424 + SM_b21554 0.41 +0.1 1,092,488 + SM_b21554 0.53 -0.9 1,092,601 + SM_b21554 0.74 -0.4 1,092,620 + SM_b21554 0.78 -0.6 1,092,620 + SM_b21554 0.78 -0.6 1,092,620 + SM_b21554 0.78 +2.0 1,092,621 - SM_b21554 0.78 +0.2 1,092,628 - SM_b21554 0.79 -0.9 1,092,817 + +0.5 1,092,849 + -0.0 1,092,850 - +0.5 1,092,983 - -0.2
Or see this region's nucleotide sequence