Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21315

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21314 and SM_b21315 are separated by 274 nucleotidesSM_b21315 and SM_b21316 overlap by 4 nucleotides SM_b21314: SM_b21314 - secreted calcium-binding protein, at 979,583 to 980,242 _b21314 SM_b21315: SM_b21315 - HlyD family protein secretion protein, at 980,517 to 981,938 _b21315 SM_b21316: SM_b21316 - ABC transporter ATP-binding protein/permease, at 981,935 to 983,704 _b21316 Position (kb) 980 981 982Strain fitness (log2 ratio) -2 -1 0 1 2at 979.581 kb on + strandat 979.582 kb on - strandat 979.600 kb on - strandat 979.703 kb on - strand, within SM_b21314at 979.747 kb on + strand, within SM_b21314at 979.747 kb on + strand, within SM_b21314at 979.757 kb on + strand, within SM_b21314at 979.758 kb on - strand, within SM_b21314at 979.832 kb on - strand, within SM_b21314at 979.832 kb on - strand, within SM_b21314at 979.987 kb on - strand, within SM_b21314at 980.020 kb on + strand, within SM_b21314at 980.020 kb on + strand, within SM_b21314at 980.020 kb on + strand, within SM_b21314at 980.040 kb on + strand, within SM_b21314at 980.040 kb on + strand, within SM_b21314at 980.041 kb on - strand, within SM_b21314at 980.041 kb on - strand, within SM_b21314at 980.734 kb on + strand, within SM_b21315at 980.734 kb on + strand, within SM_b21315at 980.734 kb on + strand, within SM_b21315at 980.734 kb on + strandat 980.735 kb on - strand, within SM_b21315at 980.735 kb on - strand, within SM_b21315at 980.735 kb on - strand, within SM_b21315at 980.735 kb on - strand, within SM_b21315at 980.735 kb on - strand, within SM_b21315at 980.735 kb on - strand, within SM_b21315at 980.739 kb on + strand, within SM_b21315at 980.740 kb on - strand, within SM_b21315at 980.740 kb on - strand, within SM_b21315at 980.776 kb on + strand, within SM_b21315at 980.814 kb on + strand, within SM_b21315at 980.814 kb on + strand, within SM_b21315at 980.814 kb on + strand, within SM_b21315at 980.815 kb on - strand, within SM_b21315at 980.815 kb on - strand, within SM_b21315at 981.237 kb on - strand, within SM_b21315at 981.319 kb on + strand, within SM_b21315at 981.571 kb on - strand, within SM_b21315at 981.659 kb on + strand, within SM_b21315at 981.660 kb on - strand, within SM_b21315at 982.197 kb on + strand, within SM_b21316at 982.271 kb on - strand, within SM_b21316at 982.271 kb on - strand, within SM_b21316at 982.271 kb on - strand, within SM_b21316at 982.271 kb on - strand, within SM_b21316at 982.417 kb on - strand, within SM_b21316at 982.417 kb on - strand, within SM_b21316at 982.455 kb on + strand, within SM_b21316at 982.455 kb on + strand, within SM_b21316at 982.456 kb on - strand, within SM_b21316at 982.558 kb on + strand, within SM_b21316at 982.632 kb on + strand, within SM_b21316

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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979,581 + +0.5
979,582 - +0.1
979,600 - -2.4
979,703 - SM_b21314 0.18 -0.8
979,747 + SM_b21314 0.25 +0.4
979,747 + SM_b21314 0.25 -0.5
979,757 + SM_b21314 0.26 +1.3
979,758 - SM_b21314 0.27 +0.0
979,832 - SM_b21314 0.38 +2.0
979,832 - SM_b21314 0.38 -0.1
979,987 - SM_b21314 0.61 +0.3
980,020 + SM_b21314 0.66 +0.2
980,020 + SM_b21314 0.66 -0.5
980,020 + SM_b21314 0.66 -0.3
980,040 + SM_b21314 0.69 +0.7
980,040 + SM_b21314 0.69 +0.4
980,041 - SM_b21314 0.69 +0.1
980,041 - SM_b21314 0.69 +0.5
980,734 + SM_b21315 0.15 +0.1
980,734 + SM_b21315 0.15 +1.3
980,734 + SM_b21315 0.15 -0.5
980,734 + +0.5
980,735 - SM_b21315 0.15 +1.9
980,735 - SM_b21315 0.15 -0.6
980,735 - SM_b21315 0.15 +0.7
980,735 - SM_b21315 0.15 +0.6
980,735 - SM_b21315 0.15 -0.2
980,735 - SM_b21315 0.15 -0.1
980,739 + SM_b21315 0.16 +0.5
980,740 - SM_b21315 0.16 -0.5
980,740 - SM_b21315 0.16 -0.1
980,776 + SM_b21315 0.18 +1.5
980,814 + SM_b21315 0.21 +1.0
980,814 + SM_b21315 0.21 -1.0
980,814 + SM_b21315 0.21 +0.9
980,815 - SM_b21315 0.21 +0.9
980,815 - SM_b21315 0.21 -0.1
981,237 - SM_b21315 0.51 +0.7
981,319 + SM_b21315 0.56 +0.6
981,571 - SM_b21315 0.74 +0.1
981,659 + SM_b21315 0.80 -1.8
981,660 - SM_b21315 0.80 +1.4
982,197 + SM_b21316 0.15 +0.8
982,271 - SM_b21316 0.19 -1.2
982,271 - SM_b21316 0.19 -0.4
982,271 - SM_b21316 0.19 +0.4
982,271 - SM_b21316 0.19 -0.2
982,417 - SM_b21316 0.27 -0.1
982,417 - SM_b21316 0.27 +0.4
982,455 + SM_b21316 0.29 -0.6
982,455 + SM_b21316 0.29 +2.4
982,456 - SM_b21316 0.29 +0.1
982,558 + SM_b21316 0.35 -0.2
982,632 + SM_b21316 0.39 -2.6

Or see this region's nucleotide sequence