Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21308 and SM_b21309 overlap by 4 nucleotides SM_b21309 and SM_b21310 are separated by 8 nucleotides SM_b21310 and SM_b21311 are separated by 11 nucleotides
SM_b21308: SM_b21308 - glycosyltransferase, forming alpha glycosyl linkages protein, at 970,842 to 972,164
_b21308
SM_b21309: SM_b21309 - hypothetical protein, at 972,161 to 974,377
_b21309
SM_b21310: SM_b21310 - hypothetical protein, at 974,386 to 975,090
_b21310
SM_b21311: SM_b21311 - glycosyltransferase, at 975,102 to 976,364
_b21311
Position (kb) 972
973
974
975 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 971.434 kb on + strand, within SM_b21308 at 971.478 kb on + strand, within SM_b21308 at 971.479 kb on - strand, within SM_b21308 at 971.540 kb on + strand, within SM_b21308 at 971.755 kb on + strand, within SM_b21308 at 971.755 kb on + strand, within SM_b21308 at 971.809 kb on + strand, within SM_b21308 at 972.037 kb on + strand at 972.037 kb on + strand at 972.038 kb on - strand at 972.038 kb on - strand at 972.040 kb on - strand at 972.040 kb on - strand at 972.074 kb on + strand at 972.075 kb on - strand at 972.093 kb on + strand at 972.391 kb on - strand, within SM_b21309 at 972.514 kb on - strand, within SM_b21309 at 972.586 kb on - strand, within SM_b21309 at 972.645 kb on + strand, within SM_b21309 at 972.735 kb on + strand, within SM_b21309 at 972.736 kb on - strand, within SM_b21309 at 972.736 kb on - strand, within SM_b21309 at 973.178 kb on + strand, within SM_b21309 at 973.178 kb on + strand, within SM_b21309 at 973.435 kb on + strand, within SM_b21309 at 973.436 kb on - strand, within SM_b21309 at 973.436 kb on - strand, within SM_b21309 at 973.568 kb on - strand, within SM_b21309 at 974.074 kb on + strand, within SM_b21309 at 974.074 kb on + strand, within SM_b21309 at 974.145 kb on + strand, within SM_b21309 at 974.284 kb on + strand at 974.285 kb on - strand at 974.380 kb on + strand at 974.380 kb on + strand at 974.380 kb on + strand at 974.380 kb on + strand at 974.381 kb on - strand at 974.625 kb on + strand, within SM_b21310 at 974.626 kb on - strand, within SM_b21310 at 974.858 kb on + strand, within SM_b21310 at 974.859 kb on - strand, within SM_b21310 at 974.859 kb on - strand, within SM_b21310 at 974.943 kb on - strand, within SM_b21310 at 975.045 kb on + strand at 975.045 kb on + strand at 975.045 kb on + strand at 975.046 kb on - strand at 975.046 kb on - strand at 975.104 kb on - strand at 975.152 kb on - strand at 975.337 kb on - strand, within SM_b21311
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 971,434 + SM_b21308 0.45 +0.5 971,478 + SM_b21308 0.48 +0.8 971,479 - SM_b21308 0.48 -0.4 971,540 + SM_b21308 0.53 +0.2 971,755 + SM_b21308 0.69 +1.2 971,755 + SM_b21308 0.69 -0.7 971,809 + SM_b21308 0.73 +0.4 972,037 + -0.5 972,037 + +0.1 972,038 - +1.2 972,038 - +0.3 972,040 - +0.1 972,040 - +1.2 972,074 + -0.1 972,075 - +0.5 972,093 + -0.9 972,391 - SM_b21309 0.10 +0.8 972,514 - SM_b21309 0.16 +0.8 972,586 - SM_b21309 0.19 +3.1 972,645 + SM_b21309 0.22 +0.0 972,735 + SM_b21309 0.26 -1.7 972,736 - SM_b21309 0.26 -0.2 972,736 - SM_b21309 0.26 -2.5 973,178 + SM_b21309 0.46 +0.1 973,178 + SM_b21309 0.46 -2.5 973,435 + SM_b21309 0.57 -2.6 973,436 - SM_b21309 0.58 -0.6 973,436 - SM_b21309 0.58 -1.3 973,568 - SM_b21309 0.63 +0.5 974,074 + SM_b21309 0.86 -0.7 974,074 + SM_b21309 0.86 -0.2 974,145 + SM_b21309 0.89 +0.1 974,284 + -1.3 974,285 - -0.5 974,380 + +0.8 974,380 + +2.5 974,380 + +0.1 974,380 + -0.1 974,381 - +0.1 974,625 + SM_b21310 0.34 -0.5 974,626 - SM_b21310 0.34 +1.3 974,858 + SM_b21310 0.67 -0.6 974,859 - SM_b21310 0.67 +0.5 974,859 - SM_b21310 0.67 -1.5 974,943 - SM_b21310 0.79 -1.9 975,045 + +0.9 975,045 + -1.5 975,045 + -1.6 975,046 - -0.5 975,046 - +0.9 975,104 - -1.3 975,152 - -0.4 975,337 - SM_b21311 0.19 -0.4
Or see this region's nucleotide sequence