Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21297 and SM_b21298 are separated by 8 nucleotides SM_b21298 and SM_b21299 are separated by 240 nucleotides
SM_b21297: SM_b21297 - bifunctional penicillin-binding protein, at 872,777 to 874,918
_b21297
SM_b21298: SM_b21298 - hypothetical protein, at 874,927 to 880,374
_b21298
SM_b21299: SM_b21299 - DeoR family transcriptional regulator, at 880,615 to 881,406
_b21299
Position (kb) 874
875
876
877
878
879
880
881 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 874.122 kb on - strand, within SM_b21297 at 874.378 kb on - strand, within SM_b21297 at 874.378 kb on - strand, within SM_b21297 at 874.481 kb on - strand, within SM_b21297 at 874.523 kb on + strand, within SM_b21297 at 874.523 kb on + strand, within SM_b21297 at 874.523 kb on + strand, within SM_b21297 at 874.524 kb on - strand, within SM_b21297 at 874.524 kb on - strand, within SM_b21297 at 874.524 kb on - strand, within SM_b21297 at 874.525 kb on + strand at 874.526 kb on - strand, within SM_b21297 at 874.526 kb on - strand, within SM_b21297 at 874.526 kb on - strand, within SM_b21297 at 874.526 kb on - strand, within SM_b21297 at 874.818 kb on - strand at 874.894 kb on - strand at 874.988 kb on + strand at 874.988 kb on + strand at 874.989 kb on - strand at 874.989 kb on - strand at 875.021 kb on + strand at 875.022 kb on - strand at 875.022 kb on - strand at 875.052 kb on - strand at 875.052 kb on - strand at 875.052 kb on - strand at 875.127 kb on + strand at 875.128 kb on - strand at 875.285 kb on + strand at 875.285 kb on + strand at 875.286 kb on - strand at 875.286 kb on - strand at 875.340 kb on - strand at 875.342 kb on + strand at 875.343 kb on - strand at 875.495 kb on + strand, within SM_b21298 at 875.603 kb on + strand, within SM_b21298 at 875.603 kb on + strand, within SM_b21298 at 875.607 kb on + strand, within SM_b21298 at 875.608 kb on - strand, within SM_b21298 at 875.641 kb on + strand, within SM_b21298 at 875.641 kb on + strand, within SM_b21298 at 875.642 kb on - strand, within SM_b21298 at 875.723 kb on + strand, within SM_b21298 at 875.766 kb on + strand, within SM_b21298 at 875.788 kb on - strand, within SM_b21298 at 875.904 kb on + strand, within SM_b21298 at 875.904 kb on + strand, within SM_b21298 at 875.981 kb on + strand, within SM_b21298 at 875.981 kb on + strand, within SM_b21298 at 875.982 kb on - strand, within SM_b21298 at 876.080 kb on + strand, within SM_b21298 at 876.080 kb on + strand, within SM_b21298 at 876.080 kb on + strand, within SM_b21298 at 876.080 kb on + strand, within SM_b21298 at 876.081 kb on - strand, within SM_b21298 at 876.081 kb on - strand, within SM_b21298 at 876.081 kb on - strand, within SM_b21298 at 876.081 kb on - strand, within SM_b21298 at 876.146 kb on + strand, within SM_b21298 at 876.146 kb on + strand, within SM_b21298 at 876.146 kb on + strand, within SM_b21298 at 876.545 kb on + strand, within SM_b21298 at 877.089 kb on - strand, within SM_b21298 at 877.136 kb on + strand, within SM_b21298 at 877.136 kb on + strand, within SM_b21298 at 877.136 kb on + strand, within SM_b21298 at 877.136 kb on + strand, within SM_b21298 at 877.136 kb on + strand, within SM_b21298 at 877.136 kb on + strand at 877.136 kb on + strand, within SM_b21298 at 877.137 kb on - strand, within SM_b21298 at 877.338 kb on - strand, within SM_b21298 at 877.338 kb on - strand, within SM_b21298 at 877.338 kb on - strand, within SM_b21298 at 877.503 kb on - strand, within SM_b21298 at 877.503 kb on - strand, within SM_b21298 at 877.565 kb on + strand, within SM_b21298 at 877.566 kb on - strand, within SM_b21298 at 877.764 kb on - strand, within SM_b21298 at 877.903 kb on + strand at 878.129 kb on + strand, within SM_b21298 at 878.130 kb on - strand, within SM_b21298 at 878.217 kb on - strand, within SM_b21298 at 878.217 kb on - strand, within SM_b21298 at 878.217 kb on - strand, within SM_b21298 at 878.217 kb on - strand, within SM_b21298 at 878.303 kb on - strand, within SM_b21298 at 878.493 kb on + strand, within SM_b21298 at 878.493 kb on + strand, within SM_b21298 at 878.494 kb on - strand, within SM_b21298 at 878.571 kb on - strand, within SM_b21298 at 878.681 kb on + strand, within SM_b21298 at 878.681 kb on + strand, within SM_b21298 at 878.682 kb on - strand, within SM_b21298 at 878.682 kb on - strand, within SM_b21298 at 878.682 kb on - strand, within SM_b21298 at 878.878 kb on - strand, within SM_b21298 at 878.993 kb on + strand, within SM_b21298 at 878.993 kb on + strand, within SM_b21298 at 878.994 kb on - strand, within SM_b21298 at 878.994 kb on - strand, within SM_b21298 at 878.994 kb on - strand, within SM_b21298 at 879.200 kb on + strand, within SM_b21298 at 879.200 kb on + strand, within SM_b21298 at 879.317 kb on - strand, within SM_b21298 at 879.317 kb on - strand, within SM_b21298 at 879.320 kb on + strand, within SM_b21298 at 879.396 kb on - strand, within SM_b21298 at 879.492 kb on - strand, within SM_b21298 at 879.611 kb on + strand, within SM_b21298 at 879.612 kb on - strand, within SM_b21298 at 879.681 kb on - strand, within SM_b21298 at 880.116 kb on + strand at 880.116 kb on + strand at 880.116 kb on + strand at 880.116 kb on + strand at 880.117 kb on - strand at 880.170 kb on - strand at 880.228 kb on + strand at 880.228 kb on + strand at 880.229 kb on - strand at 880.262 kb on + strand at 880.278 kb on + strand at 880.279 kb on - strand at 880.310 kb on - strand at 880.411 kb on + strand at 880.412 kb on - strand at 880.487 kb on + strand at 880.509 kb on + strand at 880.510 kb on - strand at 880.510 kb on - strand at 880.706 kb on + strand, within SM_b21299 at 880.706 kb on + strand, within SM_b21299 at 880.706 kb on + strand, within SM_b21299 at 880.765 kb on + strand, within SM_b21299 at 880.937 kb on - strand, within SM_b21299 at 880.937 kb on - strand, within SM_b21299 at 880.963 kb on + strand, within SM_b21299 at 880.985 kb on - strand, within SM_b21299 at 880.985 kb on - strand, within SM_b21299 at 880.985 kb on - strand, within SM_b21299 at 881.036 kb on + strand, within SM_b21299 at 881.054 kb on - strand, within SM_b21299 at 881.230 kb on + strand, within SM_b21299 at 881.231 kb on - strand, within SM_b21299 at 881.307 kb on + strand, within SM_b21299 at 881.366 kb on - strand at 881.366 kb on - strand at 881.366 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 874,122 - SM_b21297 0.63 -0.6 874,378 - SM_b21297 0.75 +0.5 874,378 - SM_b21297 0.75 +0.4 874,481 - SM_b21297 0.80 -1.4 874,523 + SM_b21297 0.82 -0.3 874,523 + SM_b21297 0.82 +0.7 874,523 + SM_b21297 0.82 -1.9 874,524 - SM_b21297 0.82 -0.7 874,524 - SM_b21297 0.82 +0.3 874,524 - SM_b21297 0.82 -0.5 874,525 + +0.0 874,526 - SM_b21297 0.82 +1.9 874,526 - SM_b21297 0.82 +0.7 874,526 - SM_b21297 0.82 -1.0 874,526 - SM_b21297 0.82 -0.6 874,818 - +0.1 874,894 - -1.6 874,988 + -0.3 874,988 + -0.6 874,989 - -0.5 874,989 - -1.6 875,021 + -0.1 875,022 - +0.9 875,022 - +1.4 875,052 - +0.0 875,052 - -1.3 875,052 - -0.0 875,127 + +0.0 875,128 - -0.2 875,285 + -3.4 875,285 + -0.3 875,286 - +0.6 875,286 - +0.6 875,340 - +0.3 875,342 + -0.2 875,343 - +1.0 875,495 + SM_b21298 0.10 +1.8 875,603 + SM_b21298 0.12 +0.1 875,603 + SM_b21298 0.12 -0.1 875,607 + SM_b21298 0.12 +1.3 875,608 - SM_b21298 0.12 -0.4 875,641 + SM_b21298 0.13 +0.1 875,641 + SM_b21298 0.13 +0.1 875,642 - SM_b21298 0.13 +0.2 875,723 + SM_b21298 0.15 +2.0 875,766 + SM_b21298 0.15 +0.8 875,788 - SM_b21298 0.16 +0.7 875,904 + SM_b21298 0.18 -0.1 875,904 + SM_b21298 0.18 +0.1 875,981 + SM_b21298 0.19 +1.2 875,981 + SM_b21298 0.19 -1.7 875,982 - SM_b21298 0.19 +0.3 876,080 + SM_b21298 0.21 -1.3 876,080 + SM_b21298 0.21 -2.3 876,080 + SM_b21298 0.21 -0.1 876,080 + SM_b21298 0.21 -1.1 876,081 - SM_b21298 0.21 -0.0 876,081 - SM_b21298 0.21 -0.4 876,081 - SM_b21298 0.21 -0.3 876,081 - SM_b21298 0.21 -0.6 876,146 + SM_b21298 0.22 -1.6 876,146 + SM_b21298 0.22 +0.7 876,146 + SM_b21298 0.22 +0.6 876,545 + SM_b21298 0.30 -0.6 877,089 - SM_b21298 0.40 -1.3 877,136 + SM_b21298 0.41 +1.9 877,136 + SM_b21298 0.41 +1.3 877,136 + SM_b21298 0.41 -0.6 877,136 + SM_b21298 0.41 +0.9 877,136 + SM_b21298 0.41 -1.4 877,136 + +2.6 877,136 + SM_b21298 0.41 +0.8 877,137 - SM_b21298 0.41 -0.9 877,338 - SM_b21298 0.44 +0.3 877,338 - SM_b21298 0.44 +0.4 877,338 - SM_b21298 0.44 +0.1 877,503 - SM_b21298 0.47 -0.8 877,503 - SM_b21298 0.47 +2.3 877,565 + SM_b21298 0.48 -0.5 877,566 - SM_b21298 0.48 +0.4 877,764 - SM_b21298 0.52 -0.2 877,903 + +0.4 878,129 + SM_b21298 0.59 -1.1 878,130 - SM_b21298 0.59 -0.1 878,217 - SM_b21298 0.60 -0.2 878,217 - SM_b21298 0.60 +0.5 878,217 - SM_b21298 0.60 +0.1 878,217 - SM_b21298 0.60 +0.8 878,303 - SM_b21298 0.62 +0.2 878,493 + SM_b21298 0.65 -2.7 878,493 + SM_b21298 0.65 -2.8 878,494 - SM_b21298 0.65 +0.9 878,571 - SM_b21298 0.67 +0.2 878,681 + SM_b21298 0.69 +0.3 878,681 + SM_b21298 0.69 +0.2 878,682 - SM_b21298 0.69 +0.3 878,682 - SM_b21298 0.69 +0.3 878,682 - SM_b21298 0.69 +0.6 878,878 - SM_b21298 0.73 +1.4 878,993 + SM_b21298 0.75 -1.7 878,993 + SM_b21298 0.75 -0.3 878,994 - SM_b21298 0.75 -0.4 878,994 - SM_b21298 0.75 +0.2 878,994 - SM_b21298 0.75 -0.8 879,200 + SM_b21298 0.78 -0.3 879,200 + SM_b21298 0.78 +0.0 879,317 - SM_b21298 0.81 +0.2 879,317 - SM_b21298 0.81 +1.5 879,320 + SM_b21298 0.81 +1.0 879,396 - SM_b21298 0.82 +0.5 879,492 - SM_b21298 0.84 +1.3 879,611 + SM_b21298 0.86 +0.1 879,612 - SM_b21298 0.86 +1.2 879,681 - SM_b21298 0.87 -0.4 880,116 + -0.3 880,116 + -0.4 880,116 + -0.5 880,116 + -0.1 880,117 - -0.8 880,170 - +0.1 880,228 + -0.9 880,228 + +0.5 880,229 - +0.7 880,262 + -1.1 880,278 + -0.4 880,279 - +1.5 880,310 - -0.3 880,411 + +1.0 880,412 - +0.6 880,487 + +0.8 880,509 + -0.6 880,510 - +0.3 880,510 - +0.2 880,706 + SM_b21299 0.11 -0.2 880,706 + SM_b21299 0.11 -2.1 880,706 + SM_b21299 0.11 -2.8 880,765 + SM_b21299 0.19 +0.2 880,937 - SM_b21299 0.41 -1.3 880,937 - SM_b21299 0.41 -2.0 880,963 + SM_b21299 0.44 -1.2 880,985 - SM_b21299 0.47 -0.7 880,985 - SM_b21299 0.47 +0.0 880,985 - SM_b21299 0.47 +0.3 881,036 + SM_b21299 0.53 -0.3 881,054 - SM_b21299 0.55 +0.3 881,230 + SM_b21299 0.78 -0.6 881,231 - SM_b21299 0.78 +0.0 881,307 + SM_b21299 0.87 -0.1 881,366 - +0.5 881,366 - +0.7 881,366 - -0.2
Or see this region's nucleotide sequence