Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21185 and SM_b21186 are separated by 115 nucleotides SM_b21186 and SM_b21187 are separated by 212 nucleotides
SM_b21185: SM_b21185 - succinate-semialdehyde dehydrogenase (NAD(P)+) protein, at 933,762 to 935,237
_b21185
SM_b21186: SM_b21186 - 4-aminobutyrate aminotransferase, at 935,353 to 936,621
_b21186
SM_b21187: SM_b21187 - LacI family transcriptional regulator, at 936,834 to 937,664
_b21187
Position (kb) 935
936
937 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 934.588 kb on + strand, within SM_b21185 at 934.589 kb on - strand, within SM_b21185 at 934.770 kb on + strand, within SM_b21185 at 934.800 kb on - strand, within SM_b21185 at 934.800 kb on - strand, within SM_b21185 at 934.873 kb on + strand, within SM_b21185 at 934.873 kb on + strand, within SM_b21185 at 934.874 kb on - strand, within SM_b21185 at 934.874 kb on - strand, within SM_b21185 at 935.103 kb on + strand at 935.104 kb on - strand at 935.283 kb on + strand at 935.283 kb on + strand at 935.284 kb on - strand at 935.284 kb on - strand at 935.385 kb on + strand at 935.739 kb on - strand, within SM_b21186 at 935.739 kb on - strand, within SM_b21186 at 935.739 kb on - strand, within SM_b21186 at 935.987 kb on + strand, within SM_b21186 at 936.168 kb on - strand, within SM_b21186 at 936.168 kb on - strand, within SM_b21186 at 936.168 kb on - strand, within SM_b21186 at 936.375 kb on - strand, within SM_b21186 at 936.375 kb on - strand, within SM_b21186 at 936.405 kb on + strand, within SM_b21186 at 936.405 kb on + strand, within SM_b21186 at 936.468 kb on + strand, within SM_b21186 at 936.468 kb on + strand, within SM_b21186 at 936.468 kb on + strand, within SM_b21186 at 936.469 kb on - strand, within SM_b21186 at 936.503 kb on + strand at 936.504 kb on - strand at 936.504 kb on - strand at 936.647 kb on + strand at 936.685 kb on + strand at 936.779 kb on - strand at 936.783 kb on - strand at 936.962 kb on + strand, within SM_b21187 at 936.963 kb on - strand, within SM_b21187 at 936.970 kb on - strand, within SM_b21187 at 936.970 kb on - strand, within SM_b21187 at 936.970 kb on - strand, within SM_b21187 at 936.970 kb on - strand, within SM_b21187 at 936.970 kb on - strand, within SM_b21187 at 936.971 kb on + strand, within SM_b21187 at 936.971 kb on + strand, within SM_b21187 at 936.971 kb on + strand, within SM_b21187 at 936.971 kb on + strand, within SM_b21187 at 936.971 kb on + strand, within SM_b21187 at 936.972 kb on - strand, within SM_b21187 at 937.548 kb on + strand, within SM_b21187 at 937.548 kb on + strand, within SM_b21187
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 934,588 + SM_b21185 0.56 -1.4 934,589 - SM_b21185 0.56 -0.9 934,770 + SM_b21185 0.68 -2.8 934,800 - SM_b21185 0.70 -0.8 934,800 - SM_b21185 0.70 -1.3 934,873 + SM_b21185 0.75 +1.1 934,873 + SM_b21185 0.75 +0.6 934,874 - SM_b21185 0.75 +0.0 934,874 - SM_b21185 0.75 -0.0 935,103 + -0.9 935,104 - +0.4 935,283 + +0.9 935,283 + -0.9 935,284 - -1.1 935,284 - -0.9 935,385 + +0.4 935,739 - SM_b21186 0.30 -0.7 935,739 - SM_b21186 0.30 +1.1 935,739 - SM_b21186 0.30 -0.5 935,987 + SM_b21186 0.50 -0.0 936,168 - SM_b21186 0.64 -0.7 936,168 - SM_b21186 0.64 -0.6 936,168 - SM_b21186 0.64 -0.3 936,375 - SM_b21186 0.81 -0.1 936,375 - SM_b21186 0.81 +0.1 936,405 + SM_b21186 0.83 +0.5 936,405 + SM_b21186 0.83 +2.6 936,468 + SM_b21186 0.88 -1.7 936,468 + SM_b21186 0.88 -1.1 936,468 + SM_b21186 0.88 -1.2 936,469 - SM_b21186 0.88 -0.2 936,503 + -0.1 936,504 - +3.2 936,504 - -0.1 936,647 + +0.9 936,685 + +0.1 936,779 - -0.3 936,783 - -0.2 936,962 + SM_b21187 0.15 +0.7 936,963 - SM_b21187 0.16 -0.1 936,970 - SM_b21187 0.16 -0.3 936,970 - SM_b21187 0.16 +0.1 936,970 - SM_b21187 0.16 -0.4 936,970 - SM_b21187 0.16 -1.2 936,970 - SM_b21187 0.16 +0.6 936,971 + SM_b21187 0.16 -1.1 936,971 + SM_b21187 0.16 -0.5 936,971 + SM_b21187 0.16 -1.5 936,971 + SM_b21187 0.16 -0.3 936,971 + SM_b21187 0.16 -0.5 936,972 - SM_b21187 0.17 -1.4 937,548 + SM_b21187 0.86 -0.7 937,548 + SM_b21187 0.86 +0.8
Or see this region's nucleotide sequence