Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21124

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21122 and SM_b21123 are separated by 14 nucleotidesSM_b21123 and SM_b21124 are separated by 16 nucleotidesSM_b21124 and SM_b21125 overlap by 4 nucleotidesSM_b21125 and SM_b21126 overlap by 4 nucleotides SM_b21122: SM_b21122 - 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data), at 760,760 to 762,367 _b21122 SM_b21123: SM_b21123 - translation initiation inhibitor, at 762,382 to 762,765 _b21123 SM_b21124: SM_b21124 - 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data), at 762,782 to 764,770 _b21124 SM_b21125: SM_b21125 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (from data), at 764,767 to 765,636 _b21125 SM_b21126: SM_b21126 - 3-methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data), at 765,633 to 766,418 _b21126 Position (kb) 762 763 764 765Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 761.912 kb on + strand, within SM_b21122at 762.023 kb on + strand, within SM_b21122at 762.210 kb on + strandat 762.211 kb on - strandat 762.236 kb on + strandat 762.237 kb on - strandat 762.237 kb on - strandat 762.497 kb on + strand, within SM_b21123at 762.670 kb on + strand, within SM_b21123at 762.670 kb on + strand, within SM_b21123at 762.671 kb on - strand, within SM_b21123at 762.763 kb on + strandat 762.763 kb on + strandat 762.764 kb on - strandat 762.782 kb on - strandat 762.782 kb on - strandat 762.959 kb on + strandat 762.977 kb on - strandat 763.083 kb on + strand, within SM_b21124at 763.083 kb on + strand, within SM_b21124at 763.083 kb on + strand, within SM_b21124at 763.084 kb on - strand, within SM_b21124at 763.084 kb on - strand, within SM_b21124at 763.441 kb on + strand, within SM_b21124at 763.497 kb on + strand, within SM_b21124at 763.583 kb on + strand, within SM_b21124at 763.649 kb on + strand, within SM_b21124at 763.745 kb on - strand, within SM_b21124at 763.777 kb on + strand, within SM_b21124at 763.778 kb on - strand, within SM_b21124at 763.815 kb on - strand, within SM_b21124at 763.815 kb on - strand, within SM_b21124at 763.921 kb on + strand, within SM_b21124at 763.937 kb on + strand, within SM_b21124at 763.937 kb on + strand, within SM_b21124at 763.965 kb on + strand, within SM_b21124at 763.965 kb on + strand, within SM_b21124at 763.966 kb on - strand, within SM_b21124at 764.029 kb on - strand, within SM_b21124at 764.105 kb on - strand, within SM_b21124at 765.021 kb on + strand, within SM_b21125at 765.021 kb on + strand, within SM_b21125at 765.193 kb on + strand, within SM_b21125at 765.193 kb on + strand, within SM_b21125at 765.193 kb on + strand, within SM_b21125at 765.194 kb on - strand, within SM_b21125at 765.221 kb on - strand, within SM_b21125at 765.221 kb on - strand, within SM_b21125at 765.287 kb on - strand, within SM_b21125at 765.402 kb on + strand, within SM_b21125at 765.402 kb on + strand, within SM_b21125at 765.403 kb on - strand, within SM_b21125at 765.496 kb on + strand, within SM_b21125at 765.526 kb on - strand, within SM_b21125

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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761,912 + SM_b21122 0.72 -1.3
762,023 + SM_b21122 0.79 +0.4
762,210 + +0.7
762,211 - +0.1
762,236 + +1.2
762,237 - -1.2
762,237 - +0.4
762,497 + SM_b21123 0.30 -1.6
762,670 + SM_b21123 0.75 +0.4
762,670 + SM_b21123 0.75 -0.3
762,671 - SM_b21123 0.75 -0.2
762,763 + -0.3
762,763 + -0.0
762,764 - -0.2
762,782 - +0.6
762,782 - +0.4
762,959 + +0.1
762,977 - -1.0
763,083 + SM_b21124 0.15 -2.8
763,083 + SM_b21124 0.15 +0.5
763,083 + SM_b21124 0.15 -1.6
763,084 - SM_b21124 0.15 -0.7
763,084 - SM_b21124 0.15 +1.0
763,441 + SM_b21124 0.33 +0.7
763,497 + SM_b21124 0.36 +0.1
763,583 + SM_b21124 0.40 +0.6
763,649 + SM_b21124 0.44 +0.1
763,745 - SM_b21124 0.48 -0.9
763,777 + SM_b21124 0.50 -1.6
763,778 - SM_b21124 0.50 +0.4
763,815 - SM_b21124 0.52 -1.1
763,815 - SM_b21124 0.52 -0.6
763,921 + SM_b21124 0.57 +0.3
763,937 + SM_b21124 0.58 -0.4
763,937 + SM_b21124 0.58 +0.3
763,965 + SM_b21124 0.59 +0.4
763,965 + SM_b21124 0.59 -1.6
763,966 - SM_b21124 0.60 -0.6
764,029 - SM_b21124 0.63 +3.3
764,105 - SM_b21124 0.67 +1.0
765,021 + SM_b21125 0.29 +0.7
765,021 + SM_b21125 0.29 -0.6
765,193 + SM_b21125 0.49 +1.0
765,193 + SM_b21125 0.49 -1.1
765,193 + SM_b21125 0.49 -0.4
765,194 - SM_b21125 0.49 -0.6
765,221 - SM_b21125 0.52 -1.6
765,221 - SM_b21125 0.52 -1.4
765,287 - SM_b21125 0.60 -1.0
765,402 + SM_b21125 0.73 -0.3
765,402 + SM_b21125 0.73 +0.7
765,403 - SM_b21125 0.73 -0.3
765,496 + SM_b21125 0.84 -1.0
765,526 - SM_b21125 0.87 +0.1

Or see this region's nucleotide sequence