Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21109

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21107 and SM_b21108 are separated by 12 nucleotidesSM_b21108 and SM_b21109 overlap by 8 nucleotidesSM_b21109 and SM_b21110 are separated by 1 nucleotidesSM_b21110 and SM_b21111 overlap by 4 nucleotides SM_b21107: SM_b21107 - dehydratase involved in L-fucose catabolism (from data), at 749,230 to 750,342 _b21107 SM_b21108: SM_b21108 - L-fucose mutarotase (EC 5.1.3.29) (from data), at 750,355 to 750,684 _b21108 SM_b21109: SM_b21109 - L-fucose dehydrogenase (EC 1.1.1.122) (from data), at 750,677 to 751,759 _b21109 SM_b21110: SM_b21110 - dehydratase involved in L-fucose catabolism (from data), at 751,761 to 752,222 _b21110 SM_b21111: SM_b21111 - oxidoreductase, RED superfamily protein, at 752,219 to 752,953 _b21111 Position (kb) 750 751 752Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 749.761 kb on + strand, within SM_b21107at 749.761 kb on + strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.983 kb on + strand, within SM_b21107at 750.007 kb on + strand, within SM_b21107at 750.008 kb on - strandat 750.008 kb on - strand, within SM_b21107at 750.008 kb on - strand, within SM_b21107at 750.009 kb on + strand, within SM_b21107at 750.009 kb on + strand, within SM_b21107at 750.010 kb on - strand, within SM_b21107at 750.178 kb on + strand, within SM_b21107at 750.179 kb on - strand, within SM_b21107at 750.188 kb on - strand, within SM_b21107at 750.297 kb on - strandat 750.406 kb on + strand, within SM_b21108at 750.406 kb on + strand, within SM_b21108at 750.406 kb on + strand, within SM_b21108at 750.407 kb on - strand, within SM_b21108at 750.476 kb on - strand, within SM_b21108at 750.526 kb on + strand, within SM_b21108at 750.527 kb on - strand, within SM_b21108at 750.527 kb on - strand, within SM_b21108at 750.794 kb on + strand, within SM_b21109at 750.794 kb on + strand, within SM_b21109at 750.795 kb on - strand, within SM_b21109at 750.796 kb on + strand, within SM_b21109at 750.797 kb on - strand, within SM_b21109at 751.000 kb on - strand, within SM_b21109at 751.142 kb on + strand, within SM_b21109at 751.143 kb on - strand, within SM_b21109at 751.143 kb on - strand, within SM_b21109at 751.256 kb on + strand, within SM_b21109at 751.256 kb on + strand, within SM_b21109at 751.256 kb on + strand, within SM_b21109at 751.257 kb on - strand, within SM_b21109at 751.472 kb on + strand, within SM_b21109at 751.473 kb on - strand, within SM_b21109at 751.473 kb on - strand, within SM_b21109at 751.473 kb on - strand, within SM_b21109at 751.779 kb on + strandat 751.783 kb on - strandat 751.783 kb on - strandat 751.783 kb on - strandat 751.783 kb on - strandat 751.791 kb on + strandat 751.791 kb on + strandat 752.008 kb on - strand, within SM_b21110at 752.008 kb on - strand, within SM_b21110at 752.054 kb on + strand, within SM_b21110at 752.055 kb on - strand, within SM_b21110at 752.213 kb on + strandat 752.213 kb on + strandat 752.214 kb on - strandat 752.254 kb on - strandat 752.274 kb on + strandat 752.274 kb on + strandat 752.275 kb on - strandat 752.275 kb on - strandat 752.714 kb on + strand, within SM_b21111at 752.714 kb on + strand, within SM_b21111at 752.715 kb on - strandat 752.718 kb on + strand, within SM_b21111at 752.718 kb on + strand, within SM_b21111

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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749,761 + SM_b21107 0.48 -0.3
749,761 + SM_b21107 0.48 +0.2
749,762 - SM_b21107 0.48 +0.6
749,762 - SM_b21107 0.48 +1.0
749,762 - SM_b21107 0.48 +0.1
749,762 - SM_b21107 0.48 +0.4
749,983 + SM_b21107 0.68 +0.7
750,007 + SM_b21107 0.70 -3.6
750,008 - -0.6
750,008 - SM_b21107 0.70 +0.2
750,008 - SM_b21107 0.70 -2.3
750,009 + SM_b21107 0.70 +0.8
750,009 + SM_b21107 0.70 -0.9
750,010 - SM_b21107 0.70 +0.9
750,178 + SM_b21107 0.85 +0.4
750,179 - SM_b21107 0.85 -1.8
750,188 - SM_b21107 0.86 +0.3
750,297 - -0.1
750,406 + SM_b21108 0.15 -0.9
750,406 + SM_b21108 0.15 -1.3
750,406 + SM_b21108 0.15 -1.0
750,407 - SM_b21108 0.16 -1.0
750,476 - SM_b21108 0.37 -0.2
750,526 + SM_b21108 0.52 -2.3
750,527 - SM_b21108 0.52 -0.8
750,527 - SM_b21108 0.52 +2.0
750,794 + SM_b21109 0.11 +0.9
750,794 + SM_b21109 0.11 +0.2
750,795 - SM_b21109 0.11 -0.1
750,796 + SM_b21109 0.11 -0.2
750,797 - SM_b21109 0.11 +0.3
751,000 - SM_b21109 0.30 +0.4
751,142 + SM_b21109 0.43 +0.3
751,143 - SM_b21109 0.43 +1.1
751,143 - SM_b21109 0.43 +0.1
751,256 + SM_b21109 0.53 -0.3
751,256 + SM_b21109 0.53 +0.6
751,256 + SM_b21109 0.53 +1.0
751,257 - SM_b21109 0.54 +1.2
751,472 + SM_b21109 0.73 +0.1
751,473 - SM_b21109 0.73 +0.7
751,473 - SM_b21109 0.73 -1.0
751,473 - SM_b21109 0.73 -0.0
751,779 + -1.1
751,783 - +0.1
751,783 - -1.6
751,783 - +0.3
751,783 - -0.5
751,791 + -0.3
751,791 + +0.0
752,008 - SM_b21110 0.53 +0.3
752,008 - SM_b21110 0.53 +0.6
752,054 + SM_b21110 0.63 -1.3
752,055 - SM_b21110 0.64 +0.0
752,213 + -0.3
752,213 + -0.1
752,214 - -0.1
752,254 - -0.2
752,274 + +2.6
752,274 + +1.3
752,275 - +0.7
752,275 - +0.5
752,714 + SM_b21111 0.67 +1.2
752,714 + SM_b21111 0.67 -1.2
752,715 - +0.4
752,718 + SM_b21111 0.68 -1.0
752,718 + SM_b21111 0.68 -0.2

Or see this region's nucleotide sequence