Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21107 and SM_b21108 are separated by 12 nucleotides SM_b21108 and SM_b21109 overlap by 8 nucleotides SM_b21109 and SM_b21110 are separated by 1 nucleotides SM_b21110 and SM_b21111 overlap by 4 nucleotides
SM_b21107: SM_b21107 - dehydratase involved in L-fucose catabolism (from data) , at 749,230 to 750,342
_b21107
SM_b21108: SM_b21108 - L-fucose mutarotase (EC 5.1.3.29) (from data) , at 750,355 to 750,684
_b21108
SM_b21109: SM_b21109 - L-fucose dehydrogenase (EC 1.1.1.122) (from data) , at 750,677 to 751,759
_b21109
SM_b21110: SM_b21110 - dehydratase involved in L-fucose catabolism (from data) , at 751,761 to 752,222
_b21110
SM_b21111: SM_b21111 - oxidoreductase, RED superfamily protein, at 752,219 to 752,953
_b21111
Position (kb)
750
751
752 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 749.761 kb on + strand, within SM_b21107 at 749.761 kb on + strand, within SM_b21107 at 749.762 kb on - strand, within SM_b21107 at 749.762 kb on - strand, within SM_b21107 at 749.762 kb on - strand, within SM_b21107 at 749.762 kb on - strand, within SM_b21107 at 749.983 kb on + strand, within SM_b21107 at 750.007 kb on + strand, within SM_b21107 at 750.008 kb on - strand at 750.008 kb on - strand, within SM_b21107 at 750.008 kb on - strand, within SM_b21107 at 750.009 kb on + strand, within SM_b21107 at 750.009 kb on + strand, within SM_b21107 at 750.010 kb on - strand, within SM_b21107 at 750.178 kb on + strand, within SM_b21107 at 750.179 kb on - strand, within SM_b21107 at 750.188 kb on - strand, within SM_b21107 at 750.297 kb on - strand at 750.406 kb on + strand, within SM_b21108 at 750.406 kb on + strand, within SM_b21108 at 750.406 kb on + strand, within SM_b21108 at 750.407 kb on - strand, within SM_b21108 at 750.476 kb on - strand, within SM_b21108 at 750.526 kb on + strand, within SM_b21108 at 750.527 kb on - strand, within SM_b21108 at 750.527 kb on - strand, within SM_b21108 at 750.794 kb on + strand, within SM_b21109 at 750.794 kb on + strand, within SM_b21109 at 750.795 kb on - strand, within SM_b21109 at 750.796 kb on + strand, within SM_b21109 at 750.797 kb on - strand, within SM_b21109 at 751.000 kb on - strand, within SM_b21109 at 751.142 kb on + strand, within SM_b21109 at 751.143 kb on - strand, within SM_b21109 at 751.143 kb on - strand, within SM_b21109 at 751.256 kb on + strand, within SM_b21109 at 751.256 kb on + strand, within SM_b21109 at 751.256 kb on + strand, within SM_b21109 at 751.257 kb on - strand, within SM_b21109 at 751.472 kb on + strand, within SM_b21109 at 751.473 kb on - strand, within SM_b21109 at 751.473 kb on - strand, within SM_b21109 at 751.473 kb on - strand, within SM_b21109 at 751.779 kb on + strand at 751.783 kb on - strand at 751.783 kb on - strand at 751.783 kb on - strand at 751.783 kb on - strand at 751.791 kb on + strand at 751.791 kb on + strand at 752.008 kb on - strand, within SM_b21110 at 752.008 kb on - strand, within SM_b21110 at 752.054 kb on + strand, within SM_b21110 at 752.055 kb on - strand, within SM_b21110 at 752.213 kb on + strand at 752.213 kb on + strand at 752.214 kb on - strand at 752.254 kb on - strand at 752.274 kb on + strand at 752.274 kb on + strand at 752.275 kb on - strand at 752.275 kb on - strand at 752.714 kb on + strand, within SM_b21111 at 752.714 kb on + strand, within SM_b21111 at 752.715 kb on - strand at 752.718 kb on + strand, within SM_b21111 at 752.718 kb on + strand, within SM_b21111
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 749,761 + SM_b21107 0.48 -0.3 749,761 + SM_b21107 0.48 +0.2 749,762 - SM_b21107 0.48 +0.6 749,762 - SM_b21107 0.48 +1.0 749,762 - SM_b21107 0.48 +0.1 749,762 - SM_b21107 0.48 +0.4 749,983 + SM_b21107 0.68 +0.7 750,007 + SM_b21107 0.70 -3.6 750,008 - -0.6 750,008 - SM_b21107 0.70 +0.2 750,008 - SM_b21107 0.70 -2.3 750,009 + SM_b21107 0.70 +0.8 750,009 + SM_b21107 0.70 -0.9 750,010 - SM_b21107 0.70 +0.9 750,178 + SM_b21107 0.85 +0.4 750,179 - SM_b21107 0.85 -1.8 750,188 - SM_b21107 0.86 +0.3 750,297 - -0.1 750,406 + SM_b21108 0.15 -0.9 750,406 + SM_b21108 0.15 -1.3 750,406 + SM_b21108 0.15 -1.0 750,407 - SM_b21108 0.16 -1.0 750,476 - SM_b21108 0.37 -0.2 750,526 + SM_b21108 0.52 -2.3 750,527 - SM_b21108 0.52 -0.8 750,527 - SM_b21108 0.52 +2.0 750,794 + SM_b21109 0.11 +0.9 750,794 + SM_b21109 0.11 +0.2 750,795 - SM_b21109 0.11 -0.1 750,796 + SM_b21109 0.11 -0.2 750,797 - SM_b21109 0.11 +0.3 751,000 - SM_b21109 0.30 +0.4 751,142 + SM_b21109 0.43 +0.3 751,143 - SM_b21109 0.43 +1.1 751,143 - SM_b21109 0.43 +0.1 751,256 + SM_b21109 0.53 -0.3 751,256 + SM_b21109 0.53 +0.6 751,256 + SM_b21109 0.53 +1.0 751,257 - SM_b21109 0.54 +1.2 751,472 + SM_b21109 0.73 +0.1 751,473 - SM_b21109 0.73 +0.7 751,473 - SM_b21109 0.73 -1.0 751,473 - SM_b21109 0.73 -0.0 751,779 + -1.1 751,783 - +0.1 751,783 - -1.6 751,783 - +0.3 751,783 - -0.5 751,791 + -0.3 751,791 + +0.0 752,008 - SM_b21110 0.53 +0.3 752,008 - SM_b21110 0.53 +0.6 752,054 + SM_b21110 0.63 -1.3 752,055 - SM_b21110 0.64 +0.0 752,213 + -0.3 752,213 + -0.1 752,214 - -0.1 752,254 - -0.2 752,274 + +2.6 752,274 + +1.3 752,275 - +0.7 752,275 - +0.5 752,714 + SM_b21111 0.67 +1.2 752,714 + SM_b21111 0.67 -1.2 752,715 - +0.4 752,718 + SM_b21111 0.68 -1.0 752,718 + SM_b21111 0.68 -0.2
Or see this region's nucleotide sequence