Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21080

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21079 and SM_b21080 are separated by 300 nucleotidesSM_b21080 and SM_b21081 are separated by 36 nucleotides SM_b21079: SM_b21079 - transcriptional regulator, at 716,513 to 717,244 _b21079 SM_b21080: SM_b21080 - response regulator protein, at 717,545 to 718,369 _b21080 SM_b21081: SM_b21081 - phosphoglucomutase phosphomannomutase, at 718,406 to 719,953 _b21081 Position (kb) 717 718 719Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 716.582 kb on - strandat 716.587 kb on + strand, within SM_b21079at 716.588 kb on - strand, within SM_b21079at 716.588 kb on - strand, within SM_b21079at 716.588 kb on - strand, within SM_b21079at 716.588 kb on - strand, within SM_b21079at 716.627 kb on + strand, within SM_b21079at 716.648 kb on - strand, within SM_b21079at 716.769 kb on + strand, within SM_b21079at 716.769 kb on + strand, within SM_b21079at 716.769 kb on + strand, within SM_b21079at 716.832 kb on + strand, within SM_b21079at 716.832 kb on + strand, within SM_b21079at 717.012 kb on + strand, within SM_b21079at 717.013 kb on - strand, within SM_b21079at 717.013 kb on - strand, within SM_b21079at 717.065 kb on + strand, within SM_b21079at 717.065 kb on + strand, within SM_b21079at 717.066 kb on - strand, within SM_b21079at 717.140 kb on + strandat 717.369 kb on - strandat 717.369 kb on - strandat 717.543 kb on + strandat 717.562 kb on + strandat 717.613 kb on + strandat 717.614 kb on - strandat 717.643 kb on + strandat 717.643 kb on + strand, within SM_b21080at 717.643 kb on + strand, within SM_b21080at 717.646 kb on + strand, within SM_b21080at 717.646 kb on + strand, within SM_b21080at 717.658 kb on + strand, within SM_b21080at 717.658 kb on + strand, within SM_b21080at 717.659 kb on - strand, within SM_b21080at 717.748 kb on + strand, within SM_b21080at 717.765 kb on + strand, within SM_b21080at 717.766 kb on - strand, within SM_b21080at 717.986 kb on + strand, within SM_b21080at 717.986 kb on + strand, within SM_b21080at 717.986 kb on + strand, within SM_b21080at 717.987 kb on - strand, within SM_b21080at 717.987 kb on - strand, within SM_b21080at 717.987 kb on - strand, within SM_b21080at 717.987 kb on - strand, within SM_b21080at 717.988 kb on + strand, within SM_b21080at 717.988 kb on + strand, within SM_b21080at 717.988 kb on + strand, within SM_b21080at 717.989 kb on - strand, within SM_b21080at 718.053 kb on + strand, within SM_b21080at 718.053 kb on + strand, within SM_b21080at 718.123 kb on + strand, within SM_b21080at 718.124 kb on - strand, within SM_b21080at 718.203 kb on - strand, within SM_b21080at 718.231 kb on - strand, within SM_b21080at 718.292 kb on + strandat 718.292 kb on + strandat 718.293 kb on - strandat 718.293 kb on - strandat 718.293 kb on - strandat 718.293 kb on - strandat 718.306 kb on + strandat 718.368 kb on - strandat 718.474 kb on + strandat 718.475 kb on - strandat 718.478 kb on + strandat 718.520 kb on + strandat 718.520 kb on + strandat 718.521 kb on - strandat 718.573 kb on + strand, within SM_b21081at 718.574 kb on - strand, within SM_b21081at 718.673 kb on + strand, within SM_b21081at 718.674 kb on - strand, within SM_b21081at 718.766 kb on + strand, within SM_b21081at 718.949 kb on + strand, within SM_b21081at 718.949 kb on + strand, within SM_b21081at 718.979 kb on + strand, within SM_b21081at 719.142 kb on - strand, within SM_b21081at 719.142 kb on - strand, within SM_b21081at 719.143 kb on + strand, within SM_b21081at 719.144 kb on - strand, within SM_b21081at 719.314 kb on + strand, within SM_b21081

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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716,582 - +0.7
716,587 + SM_b21079 0.10 -0.4
716,588 - SM_b21079 0.10 -2.2
716,588 - SM_b21079 0.10 -0.8
716,588 - SM_b21079 0.10 +0.4
716,588 - SM_b21079 0.10 +0.1
716,627 + SM_b21079 0.16 -2.1
716,648 - SM_b21079 0.18 -0.1
716,769 + SM_b21079 0.35 +0.6
716,769 + SM_b21079 0.35 -1.4
716,769 + SM_b21079 0.35 +0.6
716,832 + SM_b21079 0.44 -0.0
716,832 + SM_b21079 0.44 -1.8
717,012 + SM_b21079 0.68 +0.6
717,013 - SM_b21079 0.68 -1.2
717,013 - SM_b21079 0.68 -0.2
717,065 + SM_b21079 0.75 -2.3
717,065 + SM_b21079 0.75 +2.0
717,066 - SM_b21079 0.76 -0.2
717,140 + +2.0
717,369 - -1.0
717,369 - +0.2
717,543 + -0.1
717,562 + -2.3
717,613 + +1.0
717,614 - -0.0
717,643 + +2.0
717,643 + SM_b21080 0.12 -0.4
717,643 + SM_b21080 0.12 +0.1
717,646 + SM_b21080 0.12 +0.0
717,646 + SM_b21080 0.12 -0.2
717,658 + SM_b21080 0.14 +0.6
717,658 + SM_b21080 0.14 -1.2
717,659 - SM_b21080 0.14 -1.3
717,748 + SM_b21080 0.25 -0.4
717,765 + SM_b21080 0.27 +0.0
717,766 - SM_b21080 0.27 +1.2
717,986 + SM_b21080 0.53 +1.0
717,986 + SM_b21080 0.53 -0.3
717,986 + SM_b21080 0.53 -0.2
717,987 - SM_b21080 0.54 -0.7
717,987 - SM_b21080 0.54 +1.0
717,987 - SM_b21080 0.54 +0.5
717,987 - SM_b21080 0.54 +0.8
717,988 + SM_b21080 0.54 +0.2
717,988 + SM_b21080 0.54 -0.3
717,988 + SM_b21080 0.54 +1.6
717,989 - SM_b21080 0.54 +2.2
718,053 + SM_b21080 0.62 +0.0
718,053 + SM_b21080 0.62 +1.0
718,123 + SM_b21080 0.70 -0.1
718,124 - SM_b21080 0.70 +1.7
718,203 - SM_b21080 0.80 -0.8
718,231 - SM_b21080 0.83 -1.6
718,292 + +0.3
718,292 + -0.2
718,293 - +0.3
718,293 - -0.3
718,293 - +0.4
718,293 - +1.3
718,306 + -1.8
718,368 - +0.4
718,474 + -0.6
718,475 - -0.2
718,478 + +0.3
718,520 + -0.9
718,520 + -3.3
718,521 - +0.1
718,573 + SM_b21081 0.11 -2.2
718,574 - SM_b21081 0.11 +0.5
718,673 + SM_b21081 0.17 -0.6
718,674 - SM_b21081 0.17 -0.3
718,766 + SM_b21081 0.23 +0.2
718,949 + SM_b21081 0.35 -0.7
718,949 + SM_b21081 0.35 +0.0
718,979 + SM_b21081 0.37 -2.7
719,142 - SM_b21081 0.48 -0.0
719,142 - SM_b21081 0.48 -0.1
719,143 + SM_b21081 0.48 -0.2
719,144 - SM_b21081 0.48 -1.0
719,314 + SM_b21081 0.59 +0.3

Or see this region's nucleotide sequence