Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21076

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21075 and SM_b21076 overlap by 11 nucleotidesSM_b21076 and SM_b21077 are separated by 149 nucleotidesSM_b21077 and SM_b21078 overlap by 2 nucleotides SM_b21075: SM_b21075 - glycosyltransferase, at 712,082 to 713,314 _b21075 SM_b21076: SM_b21076 - glycosyltransferase, at 713,304 to 714,437 _b21076 SM_b21077: SM_b21077 - hypothetical protein, at 714,587 to 714,877 _b21077 SM_b21078: SM_b21078 - glycosyltransferase, at 714,876 to 716,084 _b21078 Position (kb) 713 714 715Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 712.309 kb on - strand, within SM_b21075at 712.309 kb on - strand, within SM_b21075at 712.319 kb on + strand, within SM_b21075at 712.509 kb on + strand, within SM_b21075at 712.509 kb on + strand, within SM_b21075at 712.509 kb on + strand, within SM_b21075at 712.509 kb on + strand, within SM_b21075at 712.510 kb on - strand, within SM_b21075at 712.510 kb on - strand, within SM_b21075at 712.514 kb on + strand, within SM_b21075at 712.514 kb on + strand, within SM_b21075at 712.515 kb on - strand, within SM_b21075at 712.515 kb on - strand, within SM_b21075at 712.518 kb on + strand, within SM_b21075at 712.518 kb on + strand, within SM_b21075at 712.519 kb on - strand, within SM_b21075at 712.559 kb on + strand, within SM_b21075at 712.560 kb on - strand, within SM_b21075at 712.610 kb on + strand, within SM_b21075at 712.611 kb on - strand, within SM_b21075at 712.621 kb on + strand, within SM_b21075at 712.621 kb on + strand, within SM_b21075at 712.622 kb on - strand, within SM_b21075at 712.627 kb on - strand, within SM_b21075at 712.627 kb on - strand, within SM_b21075at 712.627 kb on - strand, within SM_b21075at 712.685 kb on + strand, within SM_b21075at 712.686 kb on - strand, within SM_b21075at 712.686 kb on - strand, within SM_b21075at 712.699 kb on + strand, within SM_b21075at 712.787 kb on + strand, within SM_b21075at 712.788 kb on - strand, within SM_b21075at 712.788 kb on - strand, within SM_b21075at 712.788 kb on - strand, within SM_b21075at 712.790 kb on + strand, within SM_b21075at 712.790 kb on + strand, within SM_b21075at 712.791 kb on - strand, within SM_b21075at 712.791 kb on - strand, within SM_b21075at 712.791 kb on - strand, within SM_b21075at 712.796 kb on - strand, within SM_b21075at 712.817 kb on + strand, within SM_b21075at 712.839 kb on + strand, within SM_b21075at 712.840 kb on - strand, within SM_b21075at 712.921 kb on + strand, within SM_b21075at 712.921 kb on + strand, within SM_b21075at 712.947 kb on - strand, within SM_b21075at 712.964 kb on + strand, within SM_b21075at 712.964 kb on + strand, within SM_b21075at 712.964 kb on + strand, within SM_b21075at 712.964 kb on + strand, within SM_b21075at 712.964 kb on + strand, within SM_b21075at 712.965 kb on - strand, within SM_b21075at 712.965 kb on - strand, within SM_b21075at 713.025 kb on + strand, within SM_b21075at 713.026 kb on - strand, within SM_b21075at 713.131 kb on + strand, within SM_b21075at 713.132 kb on - strand, within SM_b21075at 713.312 kb on + strandat 713.313 kb on - strandat 713.316 kb on + strandat 713.316 kb on + strandat 713.317 kb on - strandat 713.317 kb on - strandat 713.367 kb on + strandat 713.368 kb on - strandat 713.504 kb on + strand, within SM_b21076at 713.516 kb on - strand, within SM_b21076at 713.516 kb on - strand, within SM_b21076at 713.516 kb on - strand, within SM_b21076at 713.620 kb on - strand, within SM_b21076at 713.804 kb on + strand, within SM_b21076at 714.042 kb on + strand, within SM_b21076at 714.043 kb on - strand, within SM_b21076at 714.043 kb on - strand, within SM_b21076at 714.043 kb on - strand, within SM_b21076at 714.045 kb on + strand, within SM_b21076at 714.045 kb on + strand, within SM_b21076at 714.045 kb on + strand, within SM_b21076at 714.045 kb on + strand, within SM_b21076at 714.045 kb on + strand, within SM_b21076at 714.045 kb on + strand, within SM_b21076at 714.045 kb on + strand, within SM_b21076at 714.045 kb on + strand, within SM_b21076at 714.046 kb on - strand, within SM_b21076at 714.046 kb on - strand, within SM_b21076at 714.046 kb on - strand, within SM_b21076at 714.046 kb on - strand, within SM_b21076at 714.046 kb on - strand, within SM_b21076at 714.046 kb on - strand, within SM_b21076at 714.079 kb on + strand, within SM_b21076at 714.079 kb on + strand, within SM_b21076at 714.079 kb on + strand, within SM_b21076at 714.092 kb on - strand, within SM_b21076at 714.092 kb on - strand, within SM_b21076at 714.153 kb on - strand, within SM_b21076at 714.225 kb on - strand, within SM_b21076at 714.339 kb on + strandat 714.339 kb on + strandat 714.340 kb on - strandat 714.340 kb on - strandat 714.389 kb on + strandat 714.416 kb on + strandat 714.417 kb on - strandat 714.437 kb on + strandat 714.438 kb on - strandat 714.438 kb on - strandat 714.457 kb on + strandat 714.457 kb on + strandat 714.460 kb on - strandat 714.501 kb on + strandat 714.527 kb on + strandat 714.619 kb on + strand, within SM_b21077at 714.619 kb on + strand, within SM_b21077at 714.620 kb on - strand, within SM_b21077at 714.620 kb on - strand, within SM_b21077at 714.680 kb on + strand, within SM_b21077at 714.680 kb on + strand, within SM_b21077at 714.681 kb on - strand, within SM_b21077at 714.749 kb on + strand, within SM_b21077at 714.749 kb on + strand, within SM_b21077at 714.868 kb on + strandat 714.918 kb on - strandat 714.918 kb on - strandat 714.955 kb on + strandat 714.981 kb on - strandat 715.088 kb on - strand, within SM_b21078at 715.201 kb on - strand, within SM_b21078at 715.201 kb on - strand, within SM_b21078at 715.201 kb on - strand, within SM_b21078at 715.251 kb on + strand, within SM_b21078at 715.251 kb on + strand, within SM_b21078at 715.251 kb on + strand, within SM_b21078at 715.251 kb on + strand, within SM_b21078at 715.251 kb on + strand, within SM_b21078at 715.251 kb on + strand, within SM_b21078at 715.252 kb on - strand, within SM_b21078at 715.252 kb on - strand, within SM_b21078at 715.252 kb on - strand, within SM_b21078at 715.255 kb on + strand, within SM_b21078at 715.256 kb on - strand, within SM_b21078at 715.256 kb on - strand, within SM_b21078at 715.299 kb on - strand, within SM_b21078at 715.330 kb on + strand, within SM_b21078at 715.330 kb on + strand, within SM_b21078at 715.331 kb on - strand, within SM_b21078at 715.331 kb on - strand, within SM_b21078at 715.391 kb on - strand, within SM_b21078at 715.391 kb on - strand, within SM_b21078at 715.428 kb on - strand, within SM_b21078at 715.433 kb on - strand, within SM_b21078

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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712,309 - SM_b21075 0.18 -1.5
712,309 - SM_b21075 0.18 +0.4
712,319 + SM_b21075 0.19 -0.0
712,509 + SM_b21075 0.35 +1.2
712,509 + SM_b21075 0.35 -0.0
712,509 + SM_b21075 0.35 -2.0
712,509 + SM_b21075 0.35 +0.2
712,510 - SM_b21075 0.35 -0.9
712,510 - SM_b21075 0.35 -0.3
712,514 + SM_b21075 0.35 +1.0
712,514 + SM_b21075 0.35 +0.4
712,515 - SM_b21075 0.35 +0.5
712,515 - SM_b21075 0.35 +0.2
712,518 + SM_b21075 0.35 +1.5
712,518 + SM_b21075 0.35 -0.8
712,519 - SM_b21075 0.35 +0.3
712,559 + SM_b21075 0.39 -0.6
712,560 - SM_b21075 0.39 -1.2
712,610 + SM_b21075 0.43 -0.1
712,611 - SM_b21075 0.43 +0.5
712,621 + SM_b21075 0.44 +0.7
712,621 + SM_b21075 0.44 -1.2
712,622 - SM_b21075 0.44 -0.7
712,627 - SM_b21075 0.44 +1.0
712,627 - SM_b21075 0.44 +0.3
712,627 - SM_b21075 0.44 -1.1
712,685 + SM_b21075 0.49 -0.6
712,686 - SM_b21075 0.49 +1.1
712,686 - SM_b21075 0.49 +0.9
712,699 + SM_b21075 0.50 -2.9
712,787 + SM_b21075 0.57 -1.2
712,788 - SM_b21075 0.57 -0.3
712,788 - SM_b21075 0.57 -0.2
712,788 - SM_b21075 0.57 -1.8
712,790 + SM_b21075 0.57 -0.8
712,790 + SM_b21075 0.57 +0.1
712,791 - SM_b21075 0.58 +0.4
712,791 - SM_b21075 0.58 +0.6
712,791 - SM_b21075 0.58 -0.4
712,796 - SM_b21075 0.58 -2.1
712,817 + SM_b21075 0.60 -0.5
712,839 + SM_b21075 0.61 -0.0
712,840 - SM_b21075 0.61 -0.2
712,921 + SM_b21075 0.68 +0.9
712,921 + SM_b21075 0.68 +2.5
712,947 - SM_b21075 0.70 -0.4
712,964 + SM_b21075 0.72 -0.7
712,964 + SM_b21075 0.72 -0.8
712,964 + SM_b21075 0.72 +2.3
712,964 + SM_b21075 0.72 +0.7
712,964 + SM_b21075 0.72 -1.8
712,965 - SM_b21075 0.72 +0.4
712,965 - SM_b21075 0.72 -1.0
713,025 + SM_b21075 0.76 -0.3
713,026 - SM_b21075 0.77 +0.8
713,131 + SM_b21075 0.85 -0.2
713,132 - SM_b21075 0.85 -0.0
713,312 + -0.1
713,313 - +1.8
713,316 + -0.4
713,316 + +1.1
713,317 - -4.0
713,317 - -0.1
713,367 + +0.5
713,368 - +0.5
713,504 + SM_b21076 0.18 -0.6
713,516 - SM_b21076 0.19 -0.5
713,516 - SM_b21076 0.19 -1.0
713,516 - SM_b21076 0.19 -0.4
713,620 - SM_b21076 0.28 -0.6
713,804 + SM_b21076 0.44 +0.3
714,042 + SM_b21076 0.65 +0.7
714,043 - SM_b21076 0.65 +0.1
714,043 - SM_b21076 0.65 -0.6
714,043 - SM_b21076 0.65 +1.0
714,045 + SM_b21076 0.65 -0.0
714,045 + SM_b21076 0.65 +0.2
714,045 + SM_b21076 0.65 -0.4
714,045 + SM_b21076 0.65 -1.3
714,045 + SM_b21076 0.65 -1.2
714,045 + SM_b21076 0.65 +0.5
714,045 + SM_b21076 0.65 -0.4
714,045 + SM_b21076 0.65 +0.0
714,046 - SM_b21076 0.65 -0.6
714,046 - SM_b21076 0.65 +0.2
714,046 - SM_b21076 0.65 +0.7
714,046 - SM_b21076 0.65 -0.5
714,046 - SM_b21076 0.65 -0.7
714,046 - SM_b21076 0.65 +0.2
714,079 + SM_b21076 0.68 +0.5
714,079 + SM_b21076 0.68 -0.3
714,079 + SM_b21076 0.68 -3.8
714,092 - SM_b21076 0.69 -0.1
714,092 - SM_b21076 0.69 +1.4
714,153 - SM_b21076 0.75 -0.9
714,225 - SM_b21076 0.81 -0.4
714,339 + -0.7
714,339 + +2.2
714,340 - +0.4
714,340 - +0.6
714,389 + -1.6
714,416 + +0.7
714,417 - +2.4
714,437 + +1.8
714,438 - -0.7
714,438 - -0.8
714,457 + -0.1
714,457 + -1.6
714,460 - +1.0
714,501 + +0.4
714,527 + +0.3
714,619 + SM_b21077 0.11 -3.4
714,619 + SM_b21077 0.11 +0.6
714,620 - SM_b21077 0.11 +0.8
714,620 - SM_b21077 0.11 +0.1
714,680 + SM_b21077 0.32 +0.3
714,680 + SM_b21077 0.32 -0.1
714,681 - SM_b21077 0.32 -1.2
714,749 + SM_b21077 0.56 +0.7
714,749 + SM_b21077 0.56 +0.3
714,868 + +2.8
714,918 - -0.4
714,918 - -0.0
714,955 + +0.5
714,981 - +0.0
715,088 - SM_b21078 0.18 -0.0
715,201 - SM_b21078 0.27 +0.1
715,201 - SM_b21078 0.27 -0.6
715,201 - SM_b21078 0.27 -0.1
715,251 + SM_b21078 0.31 -0.5
715,251 + SM_b21078 0.31 +1.5
715,251 + SM_b21078 0.31 +0.4
715,251 + SM_b21078 0.31 +1.1
715,251 + SM_b21078 0.31 +0.5
715,251 + SM_b21078 0.31 -0.3
715,252 - SM_b21078 0.31 -0.2
715,252 - SM_b21078 0.31 -0.4
715,252 - SM_b21078 0.31 +1.0
715,255 + SM_b21078 0.31 +0.2
715,256 - SM_b21078 0.31 +1.0
715,256 - SM_b21078 0.31 -0.5
715,299 - SM_b21078 0.35 +3.6
715,330 + SM_b21078 0.38 +0.2
715,330 + SM_b21078 0.38 -0.6
715,331 - SM_b21078 0.38 +0.1
715,331 - SM_b21078 0.38 +0.5
715,391 - SM_b21078 0.43 -0.3
715,391 - SM_b21078 0.43 +0.2
715,428 - SM_b21078 0.46 -2.2
715,433 - SM_b21078 0.46 -2.2

Or see this region's nucleotide sequence