Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21071 and SM_b21072 are separated by 44 nucleotides SM_b21072 and SM_b21073 are separated by 427 nucleotides
SM_b21071: SM_b21071 - UDP-phosphate galactosephosphotransferase, at 708,086 to 708,736
_b21071
SM_b21072: SM_b21072 - hypothetical protein, at 708,781 to 709,035
_b21072
SM_b21073: SM_b21073 - OMA family outer membrane saccharide export protein, at 709,463 to 710,830
_b21073
Position (kb) 708
709
710 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 707.789 kb on + strand at 707.789 kb on + strand at 707.792 kb on + strand at 707.792 kb on + strand at 707.793 kb on - strand at 707.795 kb on + strand at 707.795 kb on + strand at 707.796 kb on - strand at 707.823 kb on + strand at 707.868 kb on + strand at 707.869 kb on - strand at 707.869 kb on - strand at 707.869 kb on - strand at 707.873 kb on - strand at 708.055 kb on + strand at 708.055 kb on + strand at 708.056 kb on - strand at 708.196 kb on - strand, within SM_b21071 at 708.293 kb on + strand, within SM_b21071 at 708.296 kb on - strand, within SM_b21071 at 708.341 kb on + strand, within SM_b21071 at 708.342 kb on - strand, within SM_b21071 at 708.473 kb on - strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.620 kb on + strand, within SM_b21071 at 708.621 kb on - strand, within SM_b21071 at 708.650 kb on + strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.655 kb on - strand, within SM_b21071 at 708.695 kb on - strand at 708.734 kb on + strand at 708.734 kb on + strand at 708.734 kb on + strand at 708.755 kb on + strand at 708.755 kb on + strand at 708.756 kb on - strand at 708.845 kb on + strand, within SM_b21072 at 708.846 kb on - strand, within SM_b21072 at 708.846 kb on - strand, within SM_b21072 at 708.846 kb on - strand, within SM_b21072 at 708.849 kb on + strand, within SM_b21072 at 708.850 kb on - strand, within SM_b21072 at 708.856 kb on + strand, within SM_b21072 at 708.856 kb on + strand, within SM_b21072 at 708.856 kb on + strand, within SM_b21072 at 708.872 kb on + strand, within SM_b21072 at 708.873 kb on - strand, within SM_b21072 at 708.873 kb on - strand, within SM_b21072 at 709.035 kb on + strand at 709.147 kb on + strand at 709.178 kb on + strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.291 kb on + strand at 709.292 kb on - strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.383 kb on - strand at 709.383 kb on - strand at 709.390 kb on + strand at 709.390 kb on + strand at 709.424 kb on + strand at 709.444 kb on + strand at 709.444 kb on + strand at 709.444 kb on + strand at 709.445 kb on - strand at 709.445 kb on - strand at 709.452 kb on + strand at 709.453 kb on - strand at 709.453 kb on - strand at 709.465 kb on - strand at 709.662 kb on + strand, within SM_b21073 at 709.662 kb on + strand, within SM_b21073 at 709.737 kb on - strand, within SM_b21073 at 709.821 kb on + strand, within SM_b21073 at 709.822 kb on - strand, within SM_b21073 at 709.861 kb on + strand, within SM_b21073 at 709.901 kb on + strand, within SM_b21073 at 709.918 kb on - strand, within SM_b21073 at 709.918 kb on - strand, within SM_b21073 at 709.979 kb on + strand, within SM_b21073 at 709.980 kb on - strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.989 kb on - strand, within SM_b21073 at 709.989 kb on - strand, within SM_b21073 at 709.989 kb on - strand, within SM_b21073
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 707,789 + +1.3 707,789 + -1.7 707,792 + -0.8 707,792 + -0.8 707,793 - +0.6 707,795 + -0.6 707,795 + -0.6 707,796 - -0.4 707,823 + -0.7 707,868 + -1.5 707,869 - -0.5 707,869 - +0.3 707,869 - -1.2 707,873 - -0.4 708,055 + -0.4 708,055 + +0.4 708,056 - +0.7 708,196 - SM_b21071 0.17 -0.9 708,293 + SM_b21071 0.32 +0.2 708,296 - SM_b21071 0.32 -0.7 708,341 + SM_b21071 0.39 +0.2 708,342 - SM_b21071 0.39 +0.9 708,473 - SM_b21071 0.59 -1.8 708,597 + SM_b21071 0.78 -0.5 708,597 + SM_b21071 0.78 -1.5 708,597 + SM_b21071 0.78 +0.0 708,598 - SM_b21071 0.79 +1.3 708,598 - SM_b21071 0.79 -0.4 708,598 - SM_b21071 0.79 -0.6 708,598 - SM_b21071 0.79 -0.1 708,620 + SM_b21071 0.82 +0.8 708,621 - SM_b21071 0.82 -2.8 708,650 + SM_b21071 0.87 +1.7 708,651 - SM_b21071 0.87 -0.1 708,651 - SM_b21071 0.87 +0.1 708,651 - SM_b21071 0.87 +1.0 708,655 - SM_b21071 0.87 -2.0 708,695 - -4.5 708,734 + -0.3 708,734 + -1.1 708,734 + -1.0 708,755 + -2.0 708,755 + -2.3 708,756 - +1.0 708,845 + SM_b21072 0.25 -0.3 708,846 - SM_b21072 0.25 -0.7 708,846 - SM_b21072 0.25 +0.5 708,846 - SM_b21072 0.25 +1.1 708,849 + SM_b21072 0.27 +0.2 708,850 - SM_b21072 0.27 +0.7 708,856 + SM_b21072 0.29 +0.1 708,856 + SM_b21072 0.29 +1.5 708,856 + SM_b21072 0.29 +0.6 708,872 + SM_b21072 0.36 +1.2 708,873 - SM_b21072 0.36 +0.2 708,873 - SM_b21072 0.36 +1.0 709,035 + -0.8 709,147 + +0.3 709,178 + -1.8 709,179 - +0.0 709,179 - +0.5 709,179 - +0.2 709,179 - +1.7 709,179 - +0.4 709,179 - -1.7 709,291 + +0.2 709,292 - +0.9 709,382 + +1.0 709,382 + +0.4 709,382 + -2.0 709,382 + +0.1 709,382 + +0.3 709,382 + -0.3 709,383 - +0.8 709,383 - +1.0 709,390 + -0.7 709,390 + -1.9 709,424 + +0.6 709,444 + -0.8 709,444 + +2.5 709,444 + +0.1 709,445 - -2.8 709,445 - -1.7 709,452 + +0.6 709,453 - +0.9 709,453 - -0.3 709,465 - +1.4 709,662 + SM_b21073 0.15 -0.3 709,662 + SM_b21073 0.15 +0.4 709,737 - SM_b21073 0.20 -1.3 709,821 + SM_b21073 0.26 -0.3 709,822 - SM_b21073 0.26 +0.7 709,861 + SM_b21073 0.29 -0.7 709,901 + SM_b21073 0.32 +1.0 709,918 - SM_b21073 0.33 -0.3 709,918 - SM_b21073 0.33 -0.6 709,979 + SM_b21073 0.38 -0.4 709,980 - SM_b21073 0.38 -0.8 709,988 + SM_b21073 0.38 +0.2 709,988 + SM_b21073 0.38 +0.2 709,988 + SM_b21073 0.38 +0.1 709,988 + SM_b21073 0.38 +2.0 709,988 + SM_b21073 0.38 +0.4 709,989 - SM_b21073 0.38 +1.3 709,989 - SM_b21073 0.38 -0.4 709,989 - SM_b21073 0.38 -1.8
Or see this region's nucleotide sequence