Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21019 and SM_b21021 are separated by 225 nucleotides SM_b21021 and SM_b21022 are separated by 4 nucleotides
SM_b21019: SM_b21019 - sugar ABC transporter ATP-binding protein, at 642,432 to 643,949
_b21019
SM_b21021: SM_b21021 - transcriptional regulator, at 644,175 to 645,122
_b21021
SM_b21022: SM_b21022 - autoinducer-2 (AI-2) kinase, at 645,127 to 646,725
_b21022
Position (kb) 644
645
646 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 643.255 kb on + strand, within SM_b21019 at 643.255 kb on + strand, within SM_b21019 at 643.255 kb on + strand, within SM_b21019 at 643.256 kb on - strand, within SM_b21019 at 643.299 kb on + strand, within SM_b21019 at 643.446 kb on + strand, within SM_b21019 at 643.446 kb on + strand, within SM_b21019 at 643.447 kb on - strand, within SM_b21019 at 643.468 kb on - strand, within SM_b21019 at 643.468 kb on - strand, within SM_b21019 at 643.672 kb on + strand, within SM_b21019 at 643.748 kb on + strand, within SM_b21019 at 643.877 kb on - strand at 644.024 kb on - strand at 644.055 kb on + strand at 644.244 kb on + strand at 644.245 kb on - strand at 644.245 kb on - strand at 644.247 kb on + strand at 644.247 kb on + strand at 644.248 kb on - strand at 644.248 kb on - strand at 644.248 kb on - strand at 644.250 kb on + strand at 644.250 kb on + strand at 644.348 kb on + strand, within SM_b21021 at 644.360 kb on + strand, within SM_b21021 at 644.360 kb on + strand at 644.373 kb on + strand, within SM_b21021 at 644.374 kb on - strand, within SM_b21021 at 644.416 kb on - strand, within SM_b21021 at 644.433 kb on + strand, within SM_b21021 at 644.433 kb on + strand, within SM_b21021 at 644.601 kb on - strand, within SM_b21021 at 644.601 kb on - strand, within SM_b21021 at 644.609 kb on - strand, within SM_b21021 at 644.637 kb on + strand, within SM_b21021 at 644.637 kb on + strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.784 kb on + strand, within SM_b21021 at 644.785 kb on - strand, within SM_b21021 at 644.842 kb on - strand, within SM_b21021 at 645.023 kb on + strand, within SM_b21021 at 645.024 kb on - strand, within SM_b21021 at 645.028 kb on + strand at 645.028 kb on + strand at 645.028 kb on + strand at 645.028 kb on + strand at 645.029 kb on - strand at 645.029 kb on - strand at 645.029 kb on - strand at 645.029 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.141 kb on + strand at 645.142 kb on - strand at 645.398 kb on - strand, within SM_b21022 at 645.505 kb on + strand, within SM_b21022 at 645.506 kb on - strand, within SM_b21022 at 645.508 kb on - strand, within SM_b21022 at 645.584 kb on - strand, within SM_b21022 at 645.584 kb on - strand, within SM_b21022 at 645.584 kb on - strand, within SM_b21022 at 645.663 kb on + strand, within SM_b21022 at 645.663 kb on + strand, within SM_b21022 at 645.663 kb on + strand, within SM_b21022 at 645.748 kb on - strand, within SM_b21022 at 645.972 kb on + strand, within SM_b21022 at 645.972 kb on + strand, within SM_b21022 at 646.049 kb on + strand, within SM_b21022 at 646.049 kb on + strand, within SM_b21022 at 646.050 kb on - strand, within SM_b21022 at 646.050 kb on - strand, within SM_b21022 at 646.050 kb on - strand, within SM_b21022 at 646.050 kb on - strand, within SM_b21022 at 646.118 kb on - strand, within SM_b21022 at 646.118 kb on - strand, within SM_b21022
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 643,255 + SM_b21019 0.54 -0.7 643,255 + SM_b21019 0.54 -0.3 643,255 + SM_b21019 0.54 -0.6 643,256 - SM_b21019 0.54 -0.6 643,299 + SM_b21019 0.57 -0.1 643,446 + SM_b21019 0.67 +0.2 643,446 + SM_b21019 0.67 -0.4 643,447 - SM_b21019 0.67 +0.5 643,468 - SM_b21019 0.68 +0.2 643,468 - SM_b21019 0.68 -0.2 643,672 + SM_b21019 0.82 -0.6 643,748 + SM_b21019 0.87 +1.4 643,877 - -0.8 644,024 - -0.9 644,055 + +0.3 644,244 + -3.0 644,245 - +0.0 644,245 - +0.8 644,247 + +0.7 644,247 + +0.4 644,248 - -0.0 644,248 - +0.5 644,248 - +0.8 644,250 + -1.7 644,250 + -0.6 644,348 + SM_b21021 0.18 -0.5 644,360 + SM_b21021 0.20 +0.7 644,360 + +0.2 644,373 + SM_b21021 0.21 +0.7 644,374 - SM_b21021 0.21 -0.6 644,416 - SM_b21021 0.25 +0.4 644,433 + SM_b21021 0.27 -3.3 644,433 + SM_b21021 0.27 -0.1 644,601 - SM_b21021 0.45 +1.1 644,601 - SM_b21021 0.45 +2.1 644,609 - SM_b21021 0.46 -2.0 644,637 + SM_b21021 0.49 +0.8 644,637 + SM_b21021 0.49 +0.0 644,638 - SM_b21021 0.49 +1.1 644,638 - SM_b21021 0.49 -0.2 644,638 - SM_b21021 0.49 +0.7 644,638 - SM_b21021 0.49 +1.0 644,784 + SM_b21021 0.64 +0.5 644,785 - SM_b21021 0.64 +0.5 644,842 - SM_b21021 0.70 -0.3 645,023 + SM_b21021 0.89 +0.1 645,024 - SM_b21021 0.90 +0.7 645,028 + +0.3 645,028 + -2.0 645,028 + -0.2 645,028 + +0.1 645,029 - +0.3 645,029 - -3.1 645,029 - +2.3 645,029 - -0.3 645,140 - -0.1 645,140 - -3.3 645,140 - +0.8 645,140 - +0.3 645,140 - +0.6 645,140 - -0.1 645,140 - -2.6 645,140 - -0.5 645,140 - +0.3 645,141 + -0.5 645,142 - +1.6 645,398 - SM_b21022 0.17 +0.9 645,505 + SM_b21022 0.24 -0.5 645,506 - SM_b21022 0.24 +0.3 645,508 - SM_b21022 0.24 -0.3 645,584 - SM_b21022 0.29 +0.0 645,584 - SM_b21022 0.29 +1.0 645,584 - SM_b21022 0.29 +0.4 645,663 + SM_b21022 0.34 -1.2 645,663 + SM_b21022 0.34 -3.1 645,663 + SM_b21022 0.34 -0.0 645,748 - SM_b21022 0.39 +1.2 645,972 + SM_b21022 0.53 -0.8 645,972 + SM_b21022 0.53 -0.6 646,049 + SM_b21022 0.58 +1.1 646,049 + SM_b21022 0.58 -1.1 646,050 - SM_b21022 0.58 +0.4 646,050 - SM_b21022 0.58 +0.5 646,050 - SM_b21022 0.58 +0.1 646,050 - SM_b21022 0.58 -0.5 646,118 - SM_b21022 0.62 +0.7 646,118 - SM_b21022 0.62 +1.4
Or see this region's nucleotide sequence