Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21013 and SM_b21014 are separated by 205 nucleotides SM_b21014 and SM_b21015 are separated by 372 nucleotides SM_b21015 and SM_b21016 are separated by 64 nucleotides
SM_b21013: SM_b21013 - hypothetical protein, at 636,623 to 637,090
_b21013
SM_b21014: SM_b21014 - hypothetical protein, at 637,296 to 637,676
_b21014
SM_b21015: SM_b21015 - short-chain dehydrogenase, at 638,049 to 639,299
_b21015
SM_b21016: SM_b21016 - sugar ABC transporter substrate-binding protein, at 639,364 to 640,395
_b21016
Position (kb) 638
639
640 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 637.081 kb on + strand at 637.082 kb on - strand at 637.082 kb on - strand at 637.090 kb on + strand at 637.091 kb on - strand at 637.314 kb on + strand at 637.443 kb on + strand, within SM_b21014 at 637.444 kb on - strand, within SM_b21014 at 637.452 kb on + strand, within SM_b21014 at 637.452 kb on + strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.620 kb on + strand, within SM_b21014 at 637.621 kb on - strand, within SM_b21014 at 637.693 kb on + strand at 637.694 kb on - strand at 637.742 kb on - strand at 637.800 kb on - strand at 637.934 kb on + strand at 638.007 kb on + strand at 638.008 kb on - strand at 638.008 kb on - strand at 638.008 kb on - strand at 638.050 kb on + strand at 638.050 kb on + strand at 638.050 kb on + strand at 638.050 kb on + strand at 638.051 kb on - strand at 638.051 kb on - strand at 638.052 kb on + strand at 638.052 kb on + strand at 638.053 kb on - strand at 638.053 kb on - strand at 638.053 kb on - strand at 638.053 kb on - strand at 638.090 kb on - strand at 638.090 kb on - strand at 638.137 kb on + strand at 638.235 kb on - strand, within SM_b21015 at 638.314 kb on + strand, within SM_b21015 at 638.323 kb on + strand, within SM_b21015 at 638.323 kb on + strand, within SM_b21015 at 638.324 kb on - strand, within SM_b21015 at 638.335 kb on + strand, within SM_b21015 at 638.336 kb on - strand, within SM_b21015 at 638.412 kb on + strand, within SM_b21015 at 638.412 kb on + strand, within SM_b21015 at 638.501 kb on - strand, within SM_b21015 at 638.674 kb on + strand, within SM_b21015 at 638.727 kb on + strand, within SM_b21015 at 638.727 kb on + strand, within SM_b21015 at 638.727 kb on + strand, within SM_b21015 at 638.728 kb on - strand, within SM_b21015 at 638.728 kb on - strand, within SM_b21015 at 638.728 kb on - strand, within SM_b21015 at 638.756 kb on - strand, within SM_b21015 at 638.800 kb on + strand, within SM_b21015 at 638.801 kb on - strand, within SM_b21015 at 638.809 kb on + strand, within SM_b21015 at 638.810 kb on - strand, within SM_b21015 at 638.810 kb on - strand, within SM_b21015 at 638.827 kb on + strand, within SM_b21015 at 638.828 kb on - strand, within SM_b21015 at 638.828 kb on - strand, within SM_b21015 at 638.828 kb on - strand, within SM_b21015 at 638.828 kb on - strand, within SM_b21015 at 638.905 kb on + strand, within SM_b21015 at 638.906 kb on - strand, within SM_b21015 at 638.916 kb on + strand, within SM_b21015 at 638.916 kb on + strand, within SM_b21015 at 638.917 kb on - strand, within SM_b21015 at 638.988 kb on + strand, within SM_b21015 at 638.988 kb on + strand, within SM_b21015 at 638.988 kb on + strand, within SM_b21015 at 638.989 kb on - strand, within SM_b21015 at 638.989 kb on - strand, within SM_b21015 at 639.138 kb on + strand, within SM_b21015 at 639.139 kb on - strand, within SM_b21015 at 639.139 kb on - strand, within SM_b21015 at 639.139 kb on - strand, within SM_b21015 at 639.208 kb on + strand at 639.208 kb on + strand at 639.208 kb on + strand at 639.209 kb on - strand at 639.209 kb on - strand at 639.259 kb on - strand at 639.446 kb on + strand at 639.452 kb on + strand at 639.452 kb on + strand at 639.453 kb on - strand at 639.460 kb on + strand at 639.461 kb on - strand at 639.461 kb on - strand at 639.624 kb on + strand, within SM_b21016 at 639.624 kb on + strand, within SM_b21016 at 639.625 kb on - strand, within SM_b21016 at 639.758 kb on + strand, within SM_b21016 at 639.758 kb on + strand, within SM_b21016 at 639.759 kb on - strand, within SM_b21016 at 639.759 kb on - strand, within SM_b21016 at 639.772 kb on - strand, within SM_b21016 at 639.803 kb on + strand, within SM_b21016 at 639.809 kb on + strand, within SM_b21016 at 639.810 kb on - strand, within SM_b21016 at 639.815 kb on + strand, within SM_b21016 at 640.011 kb on - strand, within SM_b21016 at 640.011 kb on - strand, within SM_b21016 at 640.013 kb on + strand, within SM_b21016 at 640.013 kb on + strand, within SM_b21016 at 640.014 kb on - strand, within SM_b21016 at 640.014 kb on - strand, within SM_b21016 at 640.014 kb on - strand, within SM_b21016 at 640.136 kb on + strand, within SM_b21016 at 640.136 kb on + strand, within SM_b21016 at 640.137 kb on - strand, within SM_b21016 at 640.205 kb on + strand, within SM_b21016 at 640.205 kb on + strand, within SM_b21016 at 640.205 kb on + strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 637,081 + +0.0 637,082 - +0.1 637,082 - +0.8 637,090 + -1.3 637,091 - +1.3 637,314 + -1.3 637,443 + SM_b21014 0.39 +0.9 637,444 - SM_b21014 0.39 +0.3 637,452 + SM_b21014 0.41 +0.3 637,452 + SM_b21014 0.41 +0.5 637,453 - SM_b21014 0.41 +0.7 637,453 - SM_b21014 0.41 +0.6 637,453 - SM_b21014 0.41 +1.2 637,453 - SM_b21014 0.41 +0.4 637,453 - SM_b21014 0.41 -1.3 637,453 - SM_b21014 0.41 -0.4 637,453 - SM_b21014 0.41 -0.8 637,453 - SM_b21014 0.41 +0.1 637,453 - SM_b21014 0.41 +0.5 637,620 + SM_b21014 0.85 +1.2 637,621 - SM_b21014 0.85 +1.1 637,693 + +0.4 637,694 - +0.3 637,742 - +0.0 637,800 - -1.3 637,934 + +0.2 638,007 + -0.1 638,008 - +3.3 638,008 - +0.8 638,008 - +0.4 638,050 + +0.3 638,050 + -0.6 638,050 + -1.8 638,050 + -0.2 638,051 - -1.2 638,051 - +0.4 638,052 + +1.0 638,052 + -0.4 638,053 - -0.3 638,053 - +0.9 638,053 - -0.4 638,053 - +0.0 638,090 - -3.8 638,090 - +0.2 638,137 + +0.0 638,235 - SM_b21015 0.15 +0.5 638,314 + SM_b21015 0.21 +0.3 638,323 + SM_b21015 0.22 -0.2 638,323 + SM_b21015 0.22 +0.8 638,324 - SM_b21015 0.22 +0.5 638,335 + SM_b21015 0.23 -0.3 638,336 - SM_b21015 0.23 -2.9 638,412 + SM_b21015 0.29 +0.0 638,412 + SM_b21015 0.29 -1.0 638,501 - SM_b21015 0.36 +0.1 638,674 + SM_b21015 0.50 -0.5 638,727 + SM_b21015 0.54 +0.2 638,727 + SM_b21015 0.54 -1.3 638,727 + SM_b21015 0.54 -0.2 638,728 - SM_b21015 0.54 -0.9 638,728 - SM_b21015 0.54 -1.2 638,728 - SM_b21015 0.54 -0.8 638,756 - SM_b21015 0.57 +0.0 638,800 + SM_b21015 0.60 -0.4 638,801 - SM_b21015 0.60 +0.2 638,809 + SM_b21015 0.61 +0.2 638,810 - SM_b21015 0.61 -0.4 638,810 - SM_b21015 0.61 +0.3 638,827 + SM_b21015 0.62 -3.0 638,828 - SM_b21015 0.62 +0.2 638,828 - SM_b21015 0.62 +0.3 638,828 - SM_b21015 0.62 -0.2 638,828 - SM_b21015 0.62 +0.1 638,905 + SM_b21015 0.68 -1.5 638,906 - SM_b21015 0.69 +1.7 638,916 + SM_b21015 0.69 +1.2 638,916 + SM_b21015 0.69 +0.9 638,917 - SM_b21015 0.69 -0.3 638,988 + SM_b21015 0.75 -1.6 638,988 + SM_b21015 0.75 -2.2 638,988 + SM_b21015 0.75 -1.3 638,989 - SM_b21015 0.75 +1.2 638,989 - SM_b21015 0.75 +2.8 639,138 + SM_b21015 0.87 -1.3 639,139 - SM_b21015 0.87 +0.5 639,139 - SM_b21015 0.87 -0.5 639,139 - SM_b21015 0.87 -1.0 639,208 + +0.6 639,208 + +2.1 639,208 + -0.2 639,209 - +3.5 639,209 - -1.6 639,259 - -0.7 639,446 + +0.3 639,452 + -0.2 639,452 + -0.4 639,453 - +0.5 639,460 + -1.3 639,461 - +0.3 639,461 - -0.8 639,624 + SM_b21016 0.25 +2.0 639,624 + SM_b21016 0.25 -1.3 639,625 - SM_b21016 0.25 -0.2 639,758 + SM_b21016 0.38 +0.4 639,758 + SM_b21016 0.38 -0.0 639,759 - SM_b21016 0.38 +0.5 639,759 - SM_b21016 0.38 -1.2 639,772 - SM_b21016 0.40 -1.6 639,803 + SM_b21016 0.43 -0.3 639,809 + SM_b21016 0.43 -0.6 639,810 - SM_b21016 0.43 -0.1 639,815 + SM_b21016 0.44 +0.3 640,011 - SM_b21016 0.63 +0.2 640,011 - SM_b21016 0.63 +0.5 640,013 + SM_b21016 0.63 -0.1 640,013 + SM_b21016 0.63 +0.3 640,014 - SM_b21016 0.63 +0.3 640,014 - SM_b21016 0.63 -0.3 640,014 - SM_b21016 0.63 -0.3 640,136 + SM_b21016 0.75 -1.0 640,136 + SM_b21016 0.75 -0.2 640,137 - SM_b21016 0.75 +0.1 640,205 + SM_b21016 0.81 +1.5 640,205 + SM_b21016 0.81 -0.1 640,205 + SM_b21016 0.81 +0.2 640,206 - SM_b21016 0.82 -1.0 640,206 - SM_b21016 0.82 +1.5 640,206 - SM_b21016 0.82 +0.2 640,206 - SM_b21016 0.82 +0.7
Or see this region's nucleotide sequence