Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20843 and SM_b21013 are separated by 425 nucleotides SM_b21013 and SM_b21014 are separated by 205 nucleotides SM_b21014 and SM_b21015 are separated by 372 nucleotides
SM_b20843: SM_b20843 - hypothetical protein, at 634,671 to 636,197
_b20843
SM_b21013: SM_b21013 - hypothetical protein, at 636,623 to 637,090
_b21013
SM_b21014: SM_b21014 - hypothetical protein, at 637,296 to 637,676
_b21014
SM_b21015: SM_b21015 - short-chain dehydrogenase, at 638,049 to 639,299
_b21015
Position (kb) 636
637
638 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 635.867 kb on + strand, within SM_b20843 at 635.944 kb on + strand, within SM_b20843 at 635.953 kb on + strand, within SM_b20843 at 635.992 kb on + strand, within SM_b20843 at 636.117 kb on - strand at 636.368 kb on - strand at 636.508 kb on + strand at 636.517 kb on + strand at 636.517 kb on + strand at 636.518 kb on - strand at 636.535 kb on - strand at 636.535 kb on - strand at 636.719 kb on + strand, within SM_b21013 at 636.753 kb on + strand, within SM_b21013 at 636.754 kb on - strand, within SM_b21013 at 636.754 kb on - strand, within SM_b21013 at 636.754 kb on - strand, within SM_b21013 at 637.081 kb on + strand at 637.082 kb on - strand at 637.082 kb on - strand at 637.090 kb on + strand at 637.091 kb on - strand at 637.314 kb on + strand at 637.443 kb on + strand, within SM_b21014 at 637.444 kb on - strand, within SM_b21014 at 637.452 kb on + strand, within SM_b21014 at 637.452 kb on + strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.620 kb on + strand, within SM_b21014 at 637.621 kb on - strand, within SM_b21014 at 637.693 kb on + strand at 637.694 kb on - strand at 637.742 kb on - strand at 637.800 kb on - strand at 637.934 kb on + strand at 638.007 kb on + strand at 638.008 kb on - strand at 638.008 kb on - strand at 638.008 kb on - strand at 638.050 kb on + strand at 638.050 kb on + strand at 638.050 kb on + strand at 638.050 kb on + strand at 638.051 kb on - strand at 638.051 kb on - strand at 638.052 kb on + strand at 638.052 kb on + strand at 638.053 kb on - strand at 638.053 kb on - strand at 638.053 kb on - strand at 638.053 kb on - strand at 638.090 kb on - strand at 638.090 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 635,867 + SM_b20843 0.78 -0.2 635,944 + SM_b20843 0.83 +0.4 635,953 + SM_b20843 0.84 -1.0 635,992 + SM_b20843 0.87 -2.4 636,117 - +1.3 636,368 - +1.0 636,508 + +0.3 636,517 + +0.0 636,517 + +2.3 636,518 - +0.9 636,535 - -0.7 636,535 - +0.8 636,719 + SM_b21013 0.21 +0.4 636,753 + SM_b21013 0.28 +0.4 636,754 - SM_b21013 0.28 -0.4 636,754 - SM_b21013 0.28 +0.2 636,754 - SM_b21013 0.28 -0.2 637,081 + +0.0 637,082 - +0.1 637,082 - +0.8 637,090 + -1.3 637,091 - +1.3 637,314 + -1.3 637,443 + SM_b21014 0.39 +0.9 637,444 - SM_b21014 0.39 +0.3 637,452 + SM_b21014 0.41 +0.3 637,452 + SM_b21014 0.41 +0.5 637,453 - SM_b21014 0.41 +0.7 637,453 - SM_b21014 0.41 +0.6 637,453 - SM_b21014 0.41 +1.2 637,453 - SM_b21014 0.41 +0.4 637,453 - SM_b21014 0.41 -1.3 637,453 - SM_b21014 0.41 -0.4 637,453 - SM_b21014 0.41 -0.8 637,453 - SM_b21014 0.41 +0.1 637,453 - SM_b21014 0.41 +0.5 637,620 + SM_b21014 0.85 +1.2 637,621 - SM_b21014 0.85 +1.1 637,693 + +0.4 637,694 - +0.3 637,742 - +0.0 637,800 - -1.3 637,934 + +0.2 638,007 + -0.1 638,008 - +3.3 638,008 - +0.8 638,008 - +0.4 638,050 + +0.3 638,050 + -0.6 638,050 + -1.8 638,050 + -0.2 638,051 - -1.2 638,051 - +0.4 638,052 + +1.0 638,052 + -0.4 638,053 - -0.3 638,053 - +0.9 638,053 - -0.4 638,053 - +0.0 638,090 - -3.8 638,090 - +0.2
Or see this region's nucleotide sequence