Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21005

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21003 and SM_b21004 are separated by 108 nucleotidesSM_b21004 and SM_b21005 are separated by 21 nucleotidesSM_b21005 and SM_b21006 are separated by 9 nucleotidesSM_b21006 and SM_b21007 are separated by 37 nucleotidesSM_b21007 and SM_b21008 overlap by 4 nucleotides SM_b21003: SM_b21003 - oxidoreductase, at 1,238,942 to 1,239,985 _b21003 SM_b21004: SM_b21004 - hypothetical protein, at 1,240,094 to 1,240,540 _b21004 SM_b21005: SM_b21005 - hypothetical protein, at 1,240,562 to 1,241,029 _b21005 SM_b21006: SM_b21006 - hypothetical protein, at 1,241,039 to 1,241,281 _b21006 SM_b21007: SM_b21007 - hypothetical protein, at 1,241,319 to 1,241,738 _b21007 SM_b21008: SM_b21008 - ArsR family transcriptional regulator, at 1,241,735 to 1,242,067 _b21008 Position (kb) 1240 1241 1242Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1239.603 kb on + strand, within SM_b21003at 1239.604 kb on - strand, within SM_b21003at 1239.604 kb on - strand, within SM_b21003at 1239.967 kb on + strandat 1239.968 kb on - strandat 1239.968 kb on - strandat 1240.023 kb on + strandat 1240.024 kb on - strandat 1240.139 kb on + strand, within SM_b21004at 1240.144 kb on + strand, within SM_b21004at 1240.144 kb on + strand, within SM_b21004at 1240.145 kb on - strand, within SM_b21004at 1240.317 kb on + strand, within SM_b21004at 1240.318 kb on - strand, within SM_b21004at 1240.337 kb on + strand, within SM_b21004at 1240.567 kb on + strandat 1240.567 kb on + strandat 1240.568 kb on - strandat 1240.568 kb on - strandat 1240.568 kb on - strandat 1240.639 kb on - strand, within SM_b21005at 1240.651 kb on - strand, within SM_b21005at 1240.655 kb on + strand, within SM_b21005at 1240.655 kb on + strand, within SM_b21005at 1240.655 kb on + strand, within SM_b21005at 1240.655 kb on + strand, within SM_b21005at 1240.655 kb on + strand, within SM_b21005at 1240.656 kb on - strand, within SM_b21005at 1240.656 kb on - strand, within SM_b21005at 1240.656 kb on - strand, within SM_b21005at 1240.656 kb on - strand, within SM_b21005at 1240.656 kb on - strand, within SM_b21005at 1240.666 kb on - strand, within SM_b21005at 1240.728 kb on + strand, within SM_b21005at 1240.779 kb on + strand, within SM_b21005at 1240.780 kb on - strand, within SM_b21005at 1240.891 kb on - strand, within SM_b21005at 1240.891 kb on - strand, within SM_b21005at 1240.891 kb on - strand, within SM_b21005at 1241.079 kb on + strand, within SM_b21006at 1241.095 kb on + strand, within SM_b21006at 1241.095 kb on + strand, within SM_b21006at 1241.095 kb on + strand, within SM_b21006at 1241.095 kb on + strand, within SM_b21006at 1241.096 kb on - strand, within SM_b21006at 1241.096 kb on - strand, within SM_b21006at 1241.096 kb on - strand, within SM_b21006at 1241.096 kb on - strand, within SM_b21006at 1241.097 kb on + strand, within SM_b21006at 1241.097 kb on + strand, within SM_b21006at 1241.098 kb on - strand, within SM_b21006at 1241.098 kb on - strand, within SM_b21006at 1241.098 kb on - strand, within SM_b21006at 1241.098 kb on - strand, within SM_b21006at 1241.098 kb on - strand, within SM_b21006at 1241.098 kb on - strand, within SM_b21006at 1241.098 kb on - strand, within SM_b21006at 1241.153 kb on + strand, within SM_b21006at 1241.240 kb on + strand, within SM_b21006at 1241.240 kb on + strand, within SM_b21006at 1241.240 kb on + strand, within SM_b21006at 1241.241 kb on - strand, within SM_b21006at 1241.241 kb on - strand, within SM_b21006at 1241.241 kb on - strand, within SM_b21006at 1241.241 kb on - strand, within SM_b21006at 1241.524 kb on + strand, within SM_b21007at 1241.525 kb on - strand, within SM_b21007at 1241.757 kb on - strandat 1241.757 kb on - strandat 1241.850 kb on + strand, within SM_b21008at 1241.850 kb on + strand, within SM_b21008at 1241.851 kb on - strandat 1241.851 kb on - strand, within SM_b21008at 1241.853 kb on + strand, within SM_b21008at 1241.853 kb on + strand, within SM_b21008at 1241.854 kb on - strand, within SM_b21008at 1241.854 kb on - strand, within SM_b21008at 1241.854 kb on - strand, within SM_b21008at 1241.854 kb on - strand, within SM_b21008at 1241.854 kb on - strand, within SM_b21008

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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1,239,603 + SM_b21003 0.63 -1.7
1,239,604 - SM_b21003 0.63 +0.3
1,239,604 - SM_b21003 0.63 +1.4
1,239,967 + -0.2
1,239,968 - +0.1
1,239,968 - +2.2
1,240,023 + +1.1
1,240,024 - -0.5
1,240,139 + SM_b21004 0.10 +0.9
1,240,144 + SM_b21004 0.11 -0.9
1,240,144 + SM_b21004 0.11 +0.3
1,240,145 - SM_b21004 0.11 -1.2
1,240,317 + SM_b21004 0.50 -0.1
1,240,318 - SM_b21004 0.50 +0.7
1,240,337 + SM_b21004 0.54 -0.4
1,240,567 + -0.8
1,240,567 + -0.8
1,240,568 - -1.7
1,240,568 - +1.3
1,240,568 - -0.5
1,240,639 - SM_b21005 0.16 -0.5
1,240,651 - SM_b21005 0.19 -0.3
1,240,655 + SM_b21005 0.20 -1.5
1,240,655 + SM_b21005 0.20 -1.2
1,240,655 + SM_b21005 0.20 +1.3
1,240,655 + SM_b21005 0.20 -0.7
1,240,655 + SM_b21005 0.20 +0.6
1,240,656 - SM_b21005 0.20 -1.1
1,240,656 - SM_b21005 0.20 -1.0
1,240,656 - SM_b21005 0.20 -1.7
1,240,656 - SM_b21005 0.20 -0.1
1,240,656 - SM_b21005 0.20 -1.6
1,240,666 - SM_b21005 0.22 +1.1
1,240,728 + SM_b21005 0.35 -0.0
1,240,779 + SM_b21005 0.46 +1.1
1,240,780 - SM_b21005 0.47 +0.5
1,240,891 - SM_b21005 0.70 -0.6
1,240,891 - SM_b21005 0.70 -0.7
1,240,891 - SM_b21005 0.70 -0.3
1,241,079 + SM_b21006 0.16 -0.0
1,241,095 + SM_b21006 0.23 +0.1
1,241,095 + SM_b21006 0.23 -0.5
1,241,095 + SM_b21006 0.23 +0.3
1,241,095 + SM_b21006 0.23 -0.1
1,241,096 - SM_b21006 0.23 +0.4
1,241,096 - SM_b21006 0.23 -0.4
1,241,096 - SM_b21006 0.23 +0.8
1,241,096 - SM_b21006 0.23 +0.0
1,241,097 + SM_b21006 0.24 -1.7
1,241,097 + SM_b21006 0.24 -1.1
1,241,098 - SM_b21006 0.24 +0.6
1,241,098 - SM_b21006 0.24 +0.4
1,241,098 - SM_b21006 0.24 +0.2
1,241,098 - SM_b21006 0.24 +0.6
1,241,098 - SM_b21006 0.24 +1.3
1,241,098 - SM_b21006 0.24 -0.8
1,241,098 - SM_b21006 0.24 -2.4
1,241,153 + SM_b21006 0.47 -0.6
1,241,240 + SM_b21006 0.83 -0.5
1,241,240 + SM_b21006 0.83 +0.2
1,241,240 + SM_b21006 0.83 +0.0
1,241,241 - SM_b21006 0.83 -0.9
1,241,241 - SM_b21006 0.83 -0.7
1,241,241 - SM_b21006 0.83 +0.8
1,241,241 - SM_b21006 0.83 +0.8
1,241,524 + SM_b21007 0.49 +0.1
1,241,525 - SM_b21007 0.49 -1.0
1,241,757 - -0.1
1,241,757 - +0.4
1,241,850 + SM_b21008 0.35 +2.0
1,241,850 + SM_b21008 0.35 +0.6
1,241,851 - +3.4
1,241,851 - SM_b21008 0.35 -2.8
1,241,853 + SM_b21008 0.35 +0.3
1,241,853 + SM_b21008 0.35 -0.7
1,241,854 - SM_b21008 0.36 -2.8
1,241,854 - SM_b21008 0.36 -0.4
1,241,854 - SM_b21008 0.36 +0.3
1,241,854 - SM_b21008 0.36 -0.5
1,241,854 - SM_b21008 0.36 -1.5

Or see this region's nucleotide sequence