Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20818 and SM_b20819 are separated by 42 nucleotides SM_b20819 and SM_b20820 are separated by 109 nucleotides SM_b20820 and SM_b20821 are separated by 80 nucleotides
SM_b20818: SM_b20818 - hydrocarbon oxygenase, at 607,130 to 608,221
_b20818
SM_b20819: SM_b20819 - ferredoxin, at 608,264 to 608,581
_b20819
SM_b20820: SM_b20820 - ferredoxin reductase, at 608,691 to 609,920
_b20820
SM_b20821: SM_b20821 - ATPGTP-binding hydroxymethyltransferase, at 610,001 to 610,801
_b20821
Position (kb) 608
609
610 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 607.766 kb on + strand, within SM_b20818 at 607.766 kb on + strand, within SM_b20818 at 607.767 kb on - strand, within SM_b20818 at 607.794 kb on - strand, within SM_b20818 at 607.794 kb on - strand, within SM_b20818 at 607.934 kb on + strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.977 kb on - strand, within SM_b20818 at 607.977 kb on - strand, within SM_b20818 at 608.174 kb on + strand at 608.219 kb on + strand at 608.220 kb on - strand at 608.357 kb on + strand, within SM_b20819 at 608.358 kb on - strand, within SM_b20819 at 608.434 kb on - strand, within SM_b20819 at 608.434 kb on - strand, within SM_b20819 at 608.467 kb on + strand, within SM_b20819 at 608.484 kb on - strand, within SM_b20819 at 608.484 kb on - strand, within SM_b20819 at 608.534 kb on + strand, within SM_b20819 at 608.579 kb on + strand at 608.700 kb on - strand at 608.808 kb on + strand at 608.809 kb on - strand at 608.809 kb on - strand at 608.809 kb on - strand at 608.884 kb on - strand, within SM_b20820 at 608.900 kb on + strand, within SM_b20820 at 608.901 kb on - strand, within SM_b20820 at 608.901 kb on - strand, within SM_b20820 at 608.982 kb on + strand, within SM_b20820 at 608.983 kb on - strand, within SM_b20820 at 608.993 kb on - strand, within SM_b20820 at 608.993 kb on - strand, within SM_b20820 at 609.104 kb on + strand, within SM_b20820 at 609.104 kb on + strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.497 kb on - strand, within SM_b20820 at 609.537 kb on + strand, within SM_b20820 at 609.538 kb on - strand, within SM_b20820 at 609.663 kb on + strand, within SM_b20820 at 609.664 kb on - strand, within SM_b20820 at 609.923 kb on - strand at 609.988 kb on - strand at 610.229 kb on + strand, within SM_b20821 at 610.229 kb on + strand, within SM_b20821 at 610.230 kb on - strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.610 kb on + strand, within SM_b20821 at 610.611 kb on - strand, within SM_b20821 at 610.631 kb on + strand, within SM_b20821 at 610.631 kb on + strand, within SM_b20821 at 610.653 kb on - strand, within SM_b20821
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 607,766 + SM_b20818 0.58 -0.0 607,766 + SM_b20818 0.58 +0.3 607,767 - SM_b20818 0.58 +1.2 607,794 - SM_b20818 0.61 +0.1 607,794 - SM_b20818 0.61 -2.1 607,934 + SM_b20818 0.74 -0.1 607,935 - SM_b20818 0.74 +0.2 607,935 - SM_b20818 0.74 +1.2 607,935 - SM_b20818 0.74 +1.1 607,976 + SM_b20818 0.77 +0.6 607,976 + SM_b20818 0.77 -1.2 607,976 + SM_b20818 0.77 +0.8 607,977 - SM_b20818 0.78 -1.0 607,977 - SM_b20818 0.78 -1.4 608,174 + +0.3 608,219 + +0.0 608,220 - -0.1 608,357 + SM_b20819 0.29 +2.0 608,358 - SM_b20819 0.30 -0.2 608,434 - SM_b20819 0.53 -1.6 608,434 - SM_b20819 0.53 +1.0 608,467 + SM_b20819 0.64 +3.0 608,484 - SM_b20819 0.69 +0.7 608,484 - SM_b20819 0.69 -1.0 608,534 + SM_b20819 0.85 -0.3 608,579 + -0.1 608,700 - -0.0 608,808 + -1.4 608,809 - +0.1 608,809 - -0.5 608,809 - +0.9 608,884 - SM_b20820 0.16 +0.1 608,900 + SM_b20820 0.17 +1.0 608,901 - SM_b20820 0.17 -0.8 608,901 - SM_b20820 0.17 -0.1 608,982 + SM_b20820 0.24 -3.0 608,983 - SM_b20820 0.24 +1.4 608,993 - SM_b20820 0.25 +0.8 608,993 - SM_b20820 0.25 +0.7 609,104 + SM_b20820 0.34 -1.0 609,104 + SM_b20820 0.34 +0.5 609,105 - SM_b20820 0.34 -0.1 609,105 - SM_b20820 0.34 +1.8 609,105 - SM_b20820 0.34 +1.5 609,497 - SM_b20820 0.66 +0.3 609,537 + SM_b20820 0.69 -2.5 609,538 - SM_b20820 0.69 +0.4 609,663 + SM_b20820 0.79 -0.4 609,664 - SM_b20820 0.79 -0.3 609,923 - -0.5 609,988 - +0.4 610,229 + SM_b20821 0.28 -0.7 610,229 + SM_b20821 0.28 -0.6 610,230 - SM_b20821 0.29 -0.0 610,568 + SM_b20821 0.71 -0.3 610,568 + SM_b20821 0.71 +1.2 610,568 + SM_b20821 0.71 +0.4 610,610 + SM_b20821 0.76 +0.0 610,611 - SM_b20821 0.76 +0.7 610,631 + SM_b20821 0.79 -1.7 610,631 + SM_b20821 0.79 +0.3 610,653 - SM_b20821 0.81 +1.0
Or see this region's nucleotide sequence