Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20784

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21702 and SM_b21701 overlap by 123 nucleotidesSM_b21701 and SM_b20783 overlap by 73 nucleotidesSM_b20783 and SM_b20784 are separated by 172 nucleotidesSM_b20784 and SM_b20785 overlap by 20 nucleotidesSM_b20785 and SM_b20786 overlap by 4 nucleotides SM_b21702: SM_b21702 - transposase of insertion sequence ISRm2011-2, orfB N-terminus protein, at 1,576,466 to 1,576,606 _b21702 SM_b21701: SM_b21701 - hypothetical protein, at 1,576,484 to 1,576,621 _b21701 SM_b20783: SM_b20783 - transposase of insertion sequence ISRm2011-2, orfA protein, at 1,576,549 to 1,576,956 _b20783 SM_b20784: SM_b20784 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,577,129 to 1,577,845 _b20784 SM_b20785: SM_b20785 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,577,826 to 1,578,590 _b20785 SM_b20786: SM_b20786 - branched-chain amino acid ABC transporter permease, at 1,578,587 to 1,579,588 _b20786 Position (kb) 1577 1578Strain fitness (log2 ratio) -2 -1 0 1at 1577.416 kb on + strand, within SM_b20784at 1577.496 kb on + strand, within SM_b20784at 1577.496 kb on + strand, within SM_b20784at 1577.497 kb on - strand, within SM_b20784at 1577.497 kb on - strand, within SM_b20784at 1577.674 kb on - strand, within SM_b20784at 1577.674 kb on - strand, within SM_b20784at 1577.852 kb on - strandat 1577.863 kb on + strandat 1577.864 kb on - strandat 1578.408 kb on + strand, within SM_b20785

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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1,577,416 + SM_b20784 0.40 -1.4
1,577,496 + SM_b20784 0.51 -1.2
1,577,496 + SM_b20784 0.51 -1.3
1,577,497 - SM_b20784 0.51 -0.3
1,577,497 - SM_b20784 0.51 -0.6
1,577,674 - SM_b20784 0.76 -0.3
1,577,674 - SM_b20784 0.76 -2.2
1,577,852 - -1.3
1,577,863 + -1.2
1,577,864 - -0.3
1,578,408 + SM_b20785 0.76 -0.3

Or see this region's nucleotide sequence