Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20707 and SM_b20708 are separated by 1 nucleotides SM_b20708 and SM_b20709 are separated by 210 nucleotides
SM_b20707: SM_b20707 - adenylate cyclase, at 1,509,109 to 1,510,371
_b20707
SM_b20708: SM_b20708 - methylated-DNA--protein-cysteine methyltransferase, at 1,510,373 to 1,510,924
_b20708
SM_b20709: SM_b20709 - 3-methyladenine DNA glycosylase, at 1,511,135 to 1,511,692
_b20709
Position (kb)
1510
1511 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1509.569 kb on + strand, within SM_b20707 at 1509.607 kb on + strand, within SM_b20707 at 1509.607 kb on + strand, within SM_b20707 at 1509.728 kb on + strand, within SM_b20707 at 1509.728 kb on + strand, within SM_b20707 at 1509.729 kb on - strand, within SM_b20707 at 1509.801 kb on + strand, within SM_b20707 at 1509.801 kb on + strand, within SM_b20707 at 1509.801 kb on + strand, within SM_b20707 at 1509.802 kb on - strand, within SM_b20707 at 1509.885 kb on + strand, within SM_b20707 at 1509.885 kb on + strand, within SM_b20707 at 1509.908 kb on + strand, within SM_b20707 at 1509.909 kb on - strand, within SM_b20707 at 1509.909 kb on - strand, within SM_b20707 at 1509.941 kb on + strand, within SM_b20707 at 1509.942 kb on - strand, within SM_b20707 at 1509.950 kb on + strand, within SM_b20707 at 1510.067 kb on + strand, within SM_b20707 at 1510.067 kb on + strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.072 kb on - strand, within SM_b20707 at 1510.072 kb on - strand, within SM_b20707 at 1510.105 kb on + strand, within SM_b20707 at 1510.106 kb on - strand, within SM_b20707 at 1510.608 kb on + strand, within SM_b20708 at 1510.651 kb on - strand, within SM_b20708 at 1510.651 kb on - strand, within SM_b20708 at 1510.654 kb on + strand, within SM_b20708 at 1510.655 kb on - strand, within SM_b20708 at 1510.655 kb on - strand, within SM_b20708 at 1510.655 kb on - strand, within SM_b20708 at 1510.914 kb on + strand at 1510.978 kb on + strand at 1510.978 kb on + strand at 1511.052 kb on - strand at 1511.173 kb on + strand at 1511.241 kb on + strand, within SM_b20709 at 1511.342 kb on + strand, within SM_b20709 at 1511.342 kb on + strand, within SM_b20709 at 1511.342 kb on + strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.349 kb on - strand, within SM_b20709 at 1511.349 kb on - strand, within SM_b20709 at 1511.349 kb on - strand, within SM_b20709 at 1511.349 kb on - strand, within SM_b20709 at 1511.439 kb on + strand, within SM_b20709 at 1511.481 kb on + strand, within SM_b20709 at 1511.481 kb on + strand, within SM_b20709 at 1511.482 kb on - strand, within SM_b20709 at 1511.482 kb on - strand, within SM_b20709 at 1511.896 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,509,569 + SM_b20707 0.36 +0.7 1,509,607 + SM_b20707 0.39 -0.5 1,509,607 + SM_b20707 0.39 +1.3 1,509,728 + SM_b20707 0.49 +0.7 1,509,728 + SM_b20707 0.49 +0.3 1,509,729 - SM_b20707 0.49 -1.3 1,509,801 + SM_b20707 0.55 +0.1 1,509,801 + SM_b20707 0.55 +0.3 1,509,801 + SM_b20707 0.55 -0.2 1,509,802 - SM_b20707 0.55 +0.6 1,509,885 + SM_b20707 0.61 +0.9 1,509,885 + SM_b20707 0.61 -0.4 1,509,908 + SM_b20707 0.63 +0.6 1,509,909 - SM_b20707 0.63 +0.7 1,509,909 - SM_b20707 0.63 +0.5 1,509,941 + SM_b20707 0.66 +0.4 1,509,942 - SM_b20707 0.66 -0.5 1,509,950 + SM_b20707 0.67 -2.7 1,510,067 + SM_b20707 0.76 +0.4 1,510,067 + SM_b20707 0.76 +0.4 1,510,068 - SM_b20707 0.76 -1.2 1,510,068 - SM_b20707 0.76 -0.2 1,510,068 - SM_b20707 0.76 -0.4 1,510,068 - SM_b20707 0.76 -0.7 1,510,068 - SM_b20707 0.76 +0.4 1,510,068 - SM_b20707 0.76 +0.1 1,510,068 - SM_b20707 0.76 -1.2 1,510,068 - SM_b20707 0.76 +0.2 1,510,068 - SM_b20707 0.76 -1.0 1,510,072 - SM_b20707 0.76 +0.7 1,510,072 - SM_b20707 0.76 -0.3 1,510,105 + SM_b20707 0.79 +0.3 1,510,106 - SM_b20707 0.79 +1.1 1,510,608 + SM_b20708 0.43 +0.6 1,510,651 - SM_b20708 0.50 -1.4 1,510,651 - SM_b20708 0.50 -3.6 1,510,654 + SM_b20708 0.51 -0.5 1,510,655 - SM_b20708 0.51 -1.0 1,510,655 - SM_b20708 0.51 +1.6 1,510,655 - SM_b20708 0.51 -1.0 1,510,914 + +0.2 1,510,978 + +0.5 1,510,978 + +0.2 1,511,052 - -0.3 1,511,173 + -0.4 1,511,241 + SM_b20709 0.19 +0.9 1,511,342 + SM_b20709 0.37 -0.4 1,511,342 + SM_b20709 0.37 +0.2 1,511,342 + SM_b20709 0.37 +0.1 1,511,343 - SM_b20709 0.37 -0.7 1,511,343 - SM_b20709 0.37 -2.3 1,511,343 - SM_b20709 0.37 +0.5 1,511,343 - SM_b20709 0.37 +0.2 1,511,343 - SM_b20709 0.37 +0.1 1,511,349 - SM_b20709 0.38 -0.1 1,511,349 - SM_b20709 0.38 +2.3 1,511,349 - SM_b20709 0.38 -0.0 1,511,349 - SM_b20709 0.38 -0.4 1,511,439 + SM_b20709 0.54 -0.8 1,511,481 + SM_b20709 0.62 -1.8 1,511,481 + SM_b20709 0.62 -1.0 1,511,482 - SM_b20709 0.62 -0.3 1,511,482 - SM_b20709 0.62 -0.7 1,511,896 + +1.5
Or see this region's nucleotide sequence