Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20687 and SM_b20688 are separated by 1 nucleotides SM_b20688 and SM_b20689 are separated by 7 nucleotides SM_b20689 and SM_b20690 overlap by 4 nucleotides SM_b20690 and SM_b20691 are separated by 51 nucleotides SM_b20691 and SM_b20692 are separated by 309 nucleotides
SM_b20687: SM_b20687 - hypothetical protein, at 1,490,711 to 1,491,796
_b20687
SM_b20688: SM_b20688 - hypothetical protein, at 1,491,798 to 1,492,439
_b20688
SM_b20689: SM_b20689 - exodeoxyribonuclease III protein, at 1,492,447 to 1,493,220
_b20689
SM_b20690: SM_b20690 - hypothetical protein, at 1,493,217 to 1,493,543
_b20690
SM_b20691: SM_b20691 - hypothetical protein, at 1,493,595 to 1,493,816
_b20691
SM_b20692: SM_b20692 - 5-keto-D-gluconate 5-reductase, at 1,494,126 to 1,494,932
_b20692
Position (kb)
1492
1493
1494 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1491.489 kb on - strand, within SM_b20687 at 1491.489 kb on - strand, within SM_b20687 at 1491.702 kb on - strand at 1491.702 kb on - strand at 1491.954 kb on + strand, within SM_b20688 at 1491.954 kb on + strand, within SM_b20688 at 1491.957 kb on - strand, within SM_b20688 at 1491.957 kb on - strand, within SM_b20688 at 1492.018 kb on + strand, within SM_b20688 at 1492.023 kb on + strand, within SM_b20688 at 1492.211 kb on + strand, within SM_b20688 at 1492.309 kb on - strand, within SM_b20688 at 1492.600 kb on + strand, within SM_b20689 at 1492.708 kb on - strand, within SM_b20689 at 1492.763 kb on - strand, within SM_b20689 at 1492.918 kb on + strand, within SM_b20689 at 1492.918 kb on + strand, within SM_b20689 at 1492.919 kb on - strand, within SM_b20689 at 1492.933 kb on + strand, within SM_b20689 at 1492.934 kb on - strand, within SM_b20689 at 1493.198 kb on + strand at 1493.198 kb on + strand at 1493.219 kb on - strand at 1493.219 kb on - strand at 1493.219 kb on - strand at 1493.325 kb on + strand, within SM_b20690 at 1493.498 kb on + strand, within SM_b20690 at 1493.548 kb on + strand at 1493.549 kb on - strand at 1493.549 kb on - strand at 1493.549 kb on - strand at 1493.597 kb on - strand at 1493.762 kb on + strand, within SM_b20691 at 1493.764 kb on + strand, within SM_b20691 at 1493.764 kb on + strand, within SM_b20691 at 1493.942 kb on + strand at 1493.942 kb on + strand at 1493.943 kb on - strand at 1494.157 kb on + strand at 1494.157 kb on + strand at 1494.157 kb on + strand at 1494.162 kb on + strand at 1494.162 kb on + strand at 1494.163 kb on - strand at 1494.163 kb on - strand at 1494.163 kb on - strand at 1494.163 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,491,489 - SM_b20687 0.72 -1.2 1,491,489 - SM_b20687 0.72 +0.5 1,491,702 - +0.7 1,491,702 - -2.5 1,491,954 + SM_b20688 0.24 -1.0 1,491,954 + SM_b20688 0.24 -0.0 1,491,957 - SM_b20688 0.25 -0.1 1,491,957 - SM_b20688 0.25 -0.3 1,492,018 + SM_b20688 0.34 -0.3 1,492,023 + SM_b20688 0.35 -0.4 1,492,211 + SM_b20688 0.64 +1.6 1,492,309 - SM_b20688 0.80 +0.1 1,492,600 + SM_b20689 0.20 +0.6 1,492,708 - SM_b20689 0.34 -1.5 1,492,763 - SM_b20689 0.41 +1.6 1,492,918 + SM_b20689 0.61 +0.2 1,492,918 + SM_b20689 0.61 -0.2 1,492,919 - SM_b20689 0.61 +0.0 1,492,933 + SM_b20689 0.63 -1.6 1,492,934 - SM_b20689 0.63 -0.5 1,493,198 + -0.3 1,493,198 + -0.1 1,493,219 - -3.6 1,493,219 - -0.8 1,493,219 - +0.4 1,493,325 + SM_b20690 0.33 +0.6 1,493,498 + SM_b20690 0.86 +0.3 1,493,548 + -0.2 1,493,549 - +0.5 1,493,549 - -0.8 1,493,549 - -0.6 1,493,597 - -2.7 1,493,762 + SM_b20691 0.75 +0.4 1,493,764 + SM_b20691 0.76 +0.3 1,493,764 + SM_b20691 0.76 +0.6 1,493,942 + -0.5 1,493,942 + -1.7 1,493,943 - -0.2 1,494,157 + +0.8 1,494,157 + -1.5 1,494,157 + +0.0 1,494,162 + -1.3 1,494,162 + +0.7 1,494,163 - +0.2 1,494,163 - +0.3 1,494,163 - +0.9 1,494,163 - -0.2
Or see this region's nucleotide sequence