Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20681 and SM_b20682 are separated by 169 nucleotides SM_b20682 and SM_b20683 are separated by 126 nucleotides
SM_b20681: SM_b20681 - glyoxylate carboligase, at 1,482,468 to 1,484,252
_b20681
SM_b20682: SM_b20682 - IclR family transcriptional regulator, at 1,484,422 to 1,485,243
_b20682
SM_b20683: SM_b20683 - LysR family transcriptional regulator, at 1,485,370 to 1,486,269
_b20683
Position (kb)
1484
1485
1486 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1483.703 kb on - strand, within SM_b20681 at 1483.721 kb on - strand, within SM_b20681 at 1483.990 kb on + strand, within SM_b20681 at 1484.034 kb on + strand, within SM_b20681 at 1484.035 kb on - strand, within SM_b20681 at 1484.072 kb on - strand, within SM_b20681 at 1484.116 kb on - strand at 1484.116 kb on - strand at 1484.775 kb on + strand, within SM_b20682 at 1484.784 kb on - strand, within SM_b20682 at 1484.784 kb on - strand, within SM_b20682 at 1484.964 kb on + strand, within SM_b20682 at 1485.098 kb on - strand, within SM_b20682 at 1485.262 kb on + strand at 1485.262 kb on + strand at 1485.262 kb on + strand at 1485.262 kb on + strand at 1485.263 kb on - strand at 1485.263 kb on - strand at 1485.291 kb on + strand at 1485.372 kb on - strand at 1485.467 kb on + strand, within SM_b20683 at 1485.468 kb on - strand, within SM_b20683 at 1485.468 kb on - strand, within SM_b20683 at 1485.594 kb on - strand, within SM_b20683 at 1485.618 kb on + strand, within SM_b20683 at 1485.619 kb on - strand, within SM_b20683 at 1485.622 kb on - strand, within SM_b20683 at 1485.625 kb on + strand, within SM_b20683 at 1485.626 kb on - strand, within SM_b20683 at 1485.659 kb on + strand, within SM_b20683 at 1485.985 kb on + strand, within SM_b20683 at 1485.986 kb on - strand, within SM_b20683 at 1485.986 kb on - strand, within SM_b20683 at 1486.001 kb on - strand, within SM_b20683
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,483,703 - SM_b20681 0.69 +0.3 1,483,721 - SM_b20681 0.70 -2.0 1,483,990 + SM_b20681 0.85 -2.3 1,484,034 + SM_b20681 0.88 +0.7 1,484,035 - SM_b20681 0.88 +0.3 1,484,072 - SM_b20681 0.90 -1.8 1,484,116 - -0.0 1,484,116 - +0.1 1,484,775 + SM_b20682 0.43 -1.3 1,484,784 - SM_b20682 0.44 +1.1 1,484,784 - SM_b20682 0.44 -0.2 1,484,964 + SM_b20682 0.66 -1.1 1,485,098 - SM_b20682 0.82 +2.1 1,485,262 + -1.1 1,485,262 + -0.3 1,485,262 + +0.9 1,485,262 + +0.4 1,485,263 - -1.4 1,485,263 - +0.2 1,485,291 + +0.4 1,485,372 - -0.4 1,485,467 + SM_b20683 0.11 +1.6 1,485,468 - SM_b20683 0.11 -0.2 1,485,468 - SM_b20683 0.11 +0.2 1,485,594 - SM_b20683 0.25 -0.4 1,485,618 + SM_b20683 0.28 -0.0 1,485,619 - SM_b20683 0.28 -1.9 1,485,622 - SM_b20683 0.28 +0.1 1,485,625 + SM_b20683 0.28 +0.9 1,485,626 - SM_b20683 0.28 +0.5 1,485,659 + SM_b20683 0.32 +0.8 1,485,985 + SM_b20683 0.68 +0.3 1,485,986 - SM_b20683 0.68 -0.2 1,485,986 - SM_b20683 0.68 +0.3 1,486,001 - SM_b20683 0.70 +2.5
Or see this region's nucleotide sequence