Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20668 and SM_b20669 are separated by 11 nucleotides SM_b20669 and SM_b20670 are separated by 3 nucleotides SM_b20670 and SM_b20671 are separated by 116 nucleotides
SM_b20668: SM_b20668 - hypothetical protein, at 1,468,947 to 1,469,852
_b20668
SM_b20669: SM_b20669 - hydroxypyruvate isomerase, at 1,469,864 to 1,470,640
_b20669
SM_b20670: SM_b20670 - hypothetical protein, at 1,470,644 to 1,471,921
_b20670
SM_b20671: SM_b20671 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,472,038 to 1,473,006
_b20671
Position (kb)
1470
1471
1472 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1469.691 kb on - strand, within SM_b20668 at 1469.745 kb on + strand, within SM_b20668 at 1469.745 kb on + strand, within SM_b20668 at 1469.746 kb on - strand, within SM_b20668 at 1469.746 kb on - strand, within SM_b20668 at 1469.746 kb on - strand, within SM_b20668 at 1469.843 kb on + strand at 1469.850 kb on + strand at 1470.221 kb on + strand, within SM_b20669 at 1470.395 kb on + strand, within SM_b20669 at 1470.395 kb on + strand, within SM_b20669 at 1470.445 kb on + strand, within SM_b20669 at 1470.446 kb on - strand, within SM_b20669 at 1470.446 kb on - strand, within SM_b20669 at 1470.463 kb on + strand, within SM_b20669 at 1470.464 kb on - strand, within SM_b20669 at 1470.518 kb on + strand, within SM_b20669 at 1470.519 kb on - strand, within SM_b20669 at 1470.519 kb on - strand, within SM_b20669 at 1470.519 kb on - strand, within SM_b20669 at 1470.524 kb on + strand, within SM_b20669 at 1470.524 kb on + strand, within SM_b20669 at 1470.525 kb on - strand, within SM_b20669 at 1470.555 kb on - strand, within SM_b20669 at 1470.578 kb on + strand at 1470.579 kb on - strand at 1470.678 kb on - strand at 1470.890 kb on + strand, within SM_b20670 at 1470.891 kb on - strand, within SM_b20670 at 1470.891 kb on - strand, within SM_b20670 at 1471.022 kb on + strand, within SM_b20670 at 1471.255 kb on - strand, within SM_b20670 at 1471.350 kb on + strand, within SM_b20670 at 1471.480 kb on + strand, within SM_b20670 at 1471.481 kb on - strand, within SM_b20670 at 1471.481 kb on - strand, within SM_b20670 at 1471.635 kb on - strand, within SM_b20670 at 1472.039 kb on + strand at 1472.303 kb on + strand, within SM_b20671 at 1472.303 kb on + strand, within SM_b20671 at 1472.304 kb on - strand, within SM_b20671 at 1472.327 kb on + strand, within SM_b20671 at 1472.329 kb on + strand, within SM_b20671 at 1472.330 kb on - strand, within SM_b20671 at 1472.378 kb on + strand, within SM_b20671 at 1472.378 kb on + strand, within SM_b20671 at 1472.379 kb on - strand, within SM_b20671 at 1472.379 kb on - strand, within SM_b20671 at 1472.506 kb on + strand, within SM_b20671 at 1472.507 kb on - strand, within SM_b20671 at 1472.517 kb on + strand, within SM_b20671 at 1472.562 kb on - strand, within SM_b20671 at 1472.615 kb on + strand, within SM_b20671 at 1472.616 kb on - strand, within SM_b20671 at 1472.797 kb on + strand, within SM_b20671
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,469,691 - SM_b20668 0.82 -0.4 1,469,745 + SM_b20668 0.88 +0.1 1,469,745 + SM_b20668 0.88 +1.0 1,469,746 - SM_b20668 0.88 -0.1 1,469,746 - SM_b20668 0.88 +1.1 1,469,746 - SM_b20668 0.88 +0.7 1,469,843 + +0.8 1,469,850 + -1.4 1,470,221 + SM_b20669 0.46 -0.1 1,470,395 + SM_b20669 0.68 -0.8 1,470,395 + SM_b20669 0.68 -1.2 1,470,445 + SM_b20669 0.75 -2.0 1,470,446 - SM_b20669 0.75 +1.0 1,470,446 - SM_b20669 0.75 +0.9 1,470,463 + SM_b20669 0.77 +1.4 1,470,464 - SM_b20669 0.77 +2.1 1,470,518 + SM_b20669 0.84 -0.6 1,470,519 - SM_b20669 0.84 +1.1 1,470,519 - SM_b20669 0.84 +0.4 1,470,519 - SM_b20669 0.84 +0.1 1,470,524 + SM_b20669 0.85 -3.2 1,470,524 + SM_b20669 0.85 +0.1 1,470,525 - SM_b20669 0.85 -0.4 1,470,555 - SM_b20669 0.89 -0.2 1,470,578 + +0.7 1,470,579 - +0.7 1,470,678 - -1.1 1,470,890 + SM_b20670 0.19 -2.0 1,470,891 - SM_b20670 0.19 -2.0 1,470,891 - SM_b20670 0.19 -0.9 1,471,022 + SM_b20670 0.30 -0.2 1,471,255 - SM_b20670 0.48 +0.3 1,471,350 + SM_b20670 0.55 -2.4 1,471,480 + SM_b20670 0.65 -0.4 1,471,481 - SM_b20670 0.65 -0.4 1,471,481 - SM_b20670 0.65 +3.5 1,471,635 - SM_b20670 0.78 -2.2 1,472,039 + -0.2 1,472,303 + SM_b20671 0.27 -0.6 1,472,303 + SM_b20671 0.27 +0.3 1,472,304 - SM_b20671 0.27 -0.9 1,472,327 + SM_b20671 0.30 -0.2 1,472,329 + SM_b20671 0.30 +0.1 1,472,330 - SM_b20671 0.30 -1.5 1,472,378 + SM_b20671 0.35 +0.1 1,472,378 + SM_b20671 0.35 -0.2 1,472,379 - SM_b20671 0.35 -0.2 1,472,379 - SM_b20671 0.35 -1.3 1,472,506 + SM_b20671 0.48 +0.1 1,472,507 - SM_b20671 0.48 -0.1 1,472,517 + SM_b20671 0.49 +4.1 1,472,562 - SM_b20671 0.54 +0.2 1,472,615 + SM_b20671 0.60 +0.3 1,472,616 - SM_b20671 0.60 +0.7 1,472,797 + SM_b20671 0.78 +1.1
Or see this region's nucleotide sequence