Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20649

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20648 and SM_b20649 are separated by 526 nucleotidesSM_b20649 and SM_b20650 overlap by 4 nucleotides SM_b20648: SM_b20648 - oxidoreductase, at 1,449,018 to 1,450,055 _b20648 SM_b20649: SM_b20649 - NAD synthetase, at 1,450,582 to 1,451,586 _b20649 SM_b20650: SM_b20650 - long-chain fatty acid CoA ligase, at 1,451,583 to 1,453,130 _b20650 Position (kb) 1450 1451 1452Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1449.633 kb on + strand, within SM_b20648at 1449.633 kb on + strand, within SM_b20648at 1449.633 kb on + strand, within SM_b20648at 1449.633 kb on + strand, within SM_b20648at 1449.633 kb on + strand, within SM_b20648at 1449.633 kb on + strand, within SM_b20648at 1449.634 kb on - strand, within SM_b20648at 1449.634 kb on - strand, within SM_b20648at 1449.634 kb on - strand, within SM_b20648at 1449.634 kb on - strand, within SM_b20648at 1449.640 kb on + strand, within SM_b20648at 1449.701 kb on - strand, within SM_b20648at 1449.748 kb on + strand, within SM_b20648at 1449.748 kb on + strand, within SM_b20648at 1449.748 kb on + strand, within SM_b20648at 1449.748 kb on + strand, within SM_b20648at 1449.749 kb on - strand, within SM_b20648at 1449.749 kb on - strand, within SM_b20648at 1449.752 kb on + strand, within SM_b20648at 1449.752 kb on + strand, within SM_b20648at 1449.753 kb on - strand, within SM_b20648at 1449.754 kb on + strand, within SM_b20648at 1449.754 kb on + strand, within SM_b20648at 1449.755 kb on - strand, within SM_b20648at 1449.839 kb on - strand, within SM_b20648at 1450.038 kb on + strandat 1450.039 kb on - strandat 1450.092 kb on + strandat 1450.093 kb on - strandat 1450.093 kb on - strandat 1450.093 kb on - strandat 1450.225 kb on + strandat 1450.226 kb on - strandat 1450.226 kb on - strandat 1450.226 kb on - strandat 1450.226 kb on - strandat 1450.230 kb on + strandat 1450.253 kb on - strandat 1450.379 kb on - strandat 1450.410 kb on + strandat 1450.410 kb on + strandat 1450.411 kb on - strandat 1450.583 kb on + strandat 1450.770 kb on - strand, within SM_b20649at 1450.785 kb on - strand, within SM_b20649at 1450.785 kb on - strand, within SM_b20649at 1450.814 kb on + strand, within SM_b20649at 1450.814 kb on + strand, within SM_b20649at 1450.814 kb on + strand, within SM_b20649at 1450.814 kb on + strand, within SM_b20649at 1450.814 kb on + strand, within SM_b20649at 1450.815 kb on - strand, within SM_b20649at 1450.815 kb on - strand, within SM_b20649at 1450.880 kb on + strand, within SM_b20649at 1450.881 kb on - strand, within SM_b20649at 1450.881 kb on - strand, within SM_b20649at 1450.895 kb on + strand, within SM_b20649at 1450.896 kb on - strand, within SM_b20649at 1450.896 kb on - strand, within SM_b20649at 1450.962 kb on - strand, within SM_b20649at 1451.015 kb on + strand, within SM_b20649at 1451.016 kb on - strand, within SM_b20649at 1451.016 kb on - strand, within SM_b20649at 1451.016 kb on - strand, within SM_b20649at 1451.019 kb on - strand, within SM_b20649at 1451.049 kb on + strand, within SM_b20649at 1451.076 kb on - strand, within SM_b20649at 1451.148 kb on - strand, within SM_b20649at 1451.148 kb on - strand, within SM_b20649at 1451.148 kb on - strand, within SM_b20649at 1451.205 kb on - strand, within SM_b20649at 1451.246 kb on + strand, within SM_b20649at 1451.453 kb on - strand, within SM_b20649at 1451.912 kb on - strand, within SM_b20650at 1452.175 kb on + strand, within SM_b20650at 1452.175 kb on + strand, within SM_b20650at 1452.175 kb on + strand, within SM_b20650at 1452.175 kb on + strand, within SM_b20650at 1452.176 kb on - strand, within SM_b20650at 1452.176 kb on - strand, within SM_b20650at 1452.176 kb on - strand, within SM_b20650at 1452.176 kb on - strand, within SM_b20650at 1452.176 kb on - strand, within SM_b20650at 1452.205 kb on + strand, within SM_b20650at 1452.205 kb on + strand, within SM_b20650at 1452.214 kb on + strand, within SM_b20650at 1452.214 kb on + strand, within SM_b20650at 1452.214 kb on + strand, within SM_b20650at 1452.215 kb on - strandat 1452.292 kb on + strand, within SM_b20650at 1452.293 kb on - strand, within SM_b20650at 1452.378 kb on - strand, within SM_b20650at 1452.478 kb on + strand, within SM_b20650at 1452.479 kb on - strand, within SM_b20650at 1452.479 kb on - strand, within SM_b20650at 1452.544 kb on + strand, within SM_b20650at 1452.545 kb on - strand, within SM_b20650at 1452.545 kb on - strand, within SM_b20650at 1452.545 kb on - strand, within SM_b20650at 1452.576 kb on - strand, within SM_b20650

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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1,449,633 + SM_b20648 0.59 -0.4
1,449,633 + SM_b20648 0.59 +0.3
1,449,633 + SM_b20648 0.59 -0.1
1,449,633 + SM_b20648 0.59 +0.3
1,449,633 + SM_b20648 0.59 -2.9
1,449,633 + SM_b20648 0.59 -0.4
1,449,634 - SM_b20648 0.59 -0.5
1,449,634 - SM_b20648 0.59 +0.0
1,449,634 - SM_b20648 0.59 -0.3
1,449,634 - SM_b20648 0.59 +0.1
1,449,640 + SM_b20648 0.60 -0.8
1,449,701 - SM_b20648 0.66 +0.2
1,449,748 + SM_b20648 0.70 +0.4
1,449,748 + SM_b20648 0.70 -0.2
1,449,748 + SM_b20648 0.70 +0.3
1,449,748 + SM_b20648 0.70 +3.9
1,449,749 - SM_b20648 0.70 +0.6
1,449,749 - SM_b20648 0.70 +1.7
1,449,752 + SM_b20648 0.71 +0.4
1,449,752 + SM_b20648 0.71 +0.4
1,449,753 - SM_b20648 0.71 +0.9
1,449,754 + SM_b20648 0.71 -0.9
1,449,754 + SM_b20648 0.71 +0.2
1,449,755 - SM_b20648 0.71 +0.5
1,449,839 - SM_b20648 0.79 +0.6
1,450,038 + +0.0
1,450,039 - -1.5
1,450,092 + +0.2
1,450,093 - -0.7
1,450,093 - +0.5
1,450,093 - -0.9
1,450,225 + +1.1
1,450,226 - +2.1
1,450,226 - -2.0
1,450,226 - -0.7
1,450,226 - +1.4
1,450,230 + +1.5
1,450,253 - +0.4
1,450,379 - +0.4
1,450,410 + -2.9
1,450,410 + +0.4
1,450,411 - +0.2
1,450,583 + -0.0
1,450,770 - SM_b20649 0.19 -0.9
1,450,785 - SM_b20649 0.20 +0.1
1,450,785 - SM_b20649 0.20 -0.1
1,450,814 + SM_b20649 0.23 +0.0
1,450,814 + SM_b20649 0.23 +0.4
1,450,814 + SM_b20649 0.23 -0.3
1,450,814 + SM_b20649 0.23 -1.8
1,450,814 + SM_b20649 0.23 +0.2
1,450,815 - SM_b20649 0.23 +0.8
1,450,815 - SM_b20649 0.23 -1.3
1,450,880 + SM_b20649 0.30 +0.4
1,450,881 - SM_b20649 0.30 -0.8
1,450,881 - SM_b20649 0.30 +2.9
1,450,895 + SM_b20649 0.31 +0.6
1,450,896 - SM_b20649 0.31 -0.3
1,450,896 - SM_b20649 0.31 -0.7
1,450,962 - SM_b20649 0.38 +0.3
1,451,015 + SM_b20649 0.43 +0.1
1,451,016 - SM_b20649 0.43 -0.1
1,451,016 - SM_b20649 0.43 +0.1
1,451,016 - SM_b20649 0.43 +0.4
1,451,019 - SM_b20649 0.43 -0.2
1,451,049 + SM_b20649 0.46 +1.5
1,451,076 - SM_b20649 0.49 +1.1
1,451,148 - SM_b20649 0.56 +0.5
1,451,148 - SM_b20649 0.56 +0.6
1,451,148 - SM_b20649 0.56 +0.3
1,451,205 - SM_b20649 0.62 +0.3
1,451,246 + SM_b20649 0.66 -0.1
1,451,453 - SM_b20649 0.87 -0.4
1,451,912 - SM_b20650 0.21 -0.1
1,452,175 + SM_b20650 0.38 +1.0
1,452,175 + SM_b20650 0.38 -0.1
1,452,175 + SM_b20650 0.38 +1.4
1,452,175 + SM_b20650 0.38 -0.3
1,452,176 - SM_b20650 0.38 -2.6
1,452,176 - SM_b20650 0.38 -1.4
1,452,176 - SM_b20650 0.38 -0.5
1,452,176 - SM_b20650 0.38 -0.4
1,452,176 - SM_b20650 0.38 +1.9
1,452,205 + SM_b20650 0.40 -0.1
1,452,205 + SM_b20650 0.40 -0.3
1,452,214 + SM_b20650 0.41 -0.9
1,452,214 + SM_b20650 0.41 +0.5
1,452,214 + SM_b20650 0.41 -3.0
1,452,215 - +0.1
1,452,292 + SM_b20650 0.46 +0.0
1,452,293 - SM_b20650 0.46 -0.9
1,452,378 - SM_b20650 0.51 -0.1
1,452,478 + SM_b20650 0.58 +0.0
1,452,479 - SM_b20650 0.58 +0.2
1,452,479 - SM_b20650 0.58 -0.4
1,452,544 + SM_b20650 0.62 -2.5
1,452,545 - SM_b20650 0.62 -1.8
1,452,545 - SM_b20650 0.62 +2.1
1,452,545 - SM_b20650 0.62 +0.1
1,452,576 - SM_b20650 0.64 +1.7

Or see this region's nucleotide sequence