Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20602

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20600 and SM_b21707 are separated by 171 nucleotidesSM_b21707 and SM_b20602 are separated by 18 nucleotidesSM_b20602 and SM_b20603 are separated by 5 nucleotides SM_b20600: SM_b20600 - hypothetical protein, at 1,613,880 to 1,614,503 _b20600 SM_b21707: SM_b21707 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,614,675 to 1,615,370 _b21707 SM_b20602: SM_b20602 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,615,389 to 1,616,141 _b20602 SM_b20603: SM_b20603 - branched-chain amino acid ABC transporter permease, at 1,616,147 to 1,617,322 _b20603 Position (kb) 1615 1616 1617Strain fitness (log2 ratio) -2 -1 0 1 2at 1614.450 kb on + strandat 1614.685 kb on - strandat 1614.759 kb on - strand, within SM_b21707at 1614.760 kb on + strand, within SM_b21707at 1614.760 kb on + strand, within SM_b21707at 1614.760 kb on + strand, within SM_b21707at 1614.760 kb on + strand, within SM_b21707at 1614.760 kb on + strand, within SM_b21707at 1614.761 kb on - strand, within SM_b21707at 1614.797 kb on - strand, within SM_b21707at 1614.797 kb on - strand, within SM_b21707at 1614.797 kb on - strand, within SM_b21707at 1614.842 kb on - strand, within SM_b21707at 1615.026 kb on + strand, within SM_b21707at 1615.026 kb on + strand, within SM_b21707at 1615.026 kb on + strand, within SM_b21707at 1615.026 kb on + strand, within SM_b21707at 1615.027 kb on - strand, within SM_b21707at 1615.027 kb on - strandat 1615.027 kb on - strand, within SM_b21707at 1615.027 kb on - strand, within SM_b21707at 1615.027 kb on - strand, within SM_b21707at 1615.027 kb on - strand, within SM_b21707at 1615.027 kb on - strand, within SM_b21707at 1615.027 kb on - strand, within SM_b21707at 1615.027 kb on - strand, within SM_b21707at 1615.028 kb on + strand, within SM_b21707at 1615.028 kb on + strand, within SM_b21707at 1615.029 kb on - strand, within SM_b21707at 1615.029 kb on - strand, within SM_b21707at 1615.132 kb on + strand, within SM_b21707at 1615.340 kb on - strandat 1615.402 kb on + strandat 1615.402 kb on + strandat 1615.402 kb on + strandat 1615.402 kb on + strandat 1615.402 kb on + strandat 1615.403 kb on - strandat 1615.778 kb on - strand, within SM_b20602at 1615.778 kb on - strand, within SM_b20602at 1615.842 kb on - strand, within SM_b20602at 1616.047 kb on - strand, within SM_b20602at 1616.110 kb on + strandat 1616.110 kb on + strandat 1616.111 kb on - strandat 1616.111 kb on - strandat 1616.248 kb on - strandat 1616.351 kb on + strand, within SM_b20603at 1616.351 kb on + strand, within SM_b20603at 1616.351 kb on + strand, within SM_b20603at 1616.352 kb on - strand, within SM_b20603at 1616.352 kb on - strand, within SM_b20603at 1616.429 kb on + strand, within SM_b20603at 1616.429 kb on + strand, within SM_b20603at 1616.429 kb on + strand, within SM_b20603at 1616.430 kb on - strand, within SM_b20603at 1616.430 kb on - strand, within SM_b20603at 1616.430 kb on - strand, within SM_b20603at 1616.430 kb on - strand, within SM_b20603at 1616.496 kb on + strand, within SM_b20603at 1616.497 kb on - strand, within SM_b20603at 1616.811 kb on + strand, within SM_b20603at 1616.811 kb on + strand, within SM_b20603at 1616.812 kb on - strand, within SM_b20603at 1616.841 kb on + strand, within SM_b20603at 1616.841 kb on + strand, within SM_b20603at 1616.842 kb on - strand, within SM_b20603at 1616.842 kb on - strand, within SM_b20603at 1616.842 kb on - strand, within SM_b20603at 1617.016 kb on - strand, within SM_b20603at 1617.048 kb on + strand, within SM_b20603at 1617.049 kb on - strand, within SM_b20603at 1617.049 kb on - strand, within SM_b20603at 1617.049 kb on - strand, within SM_b20603at 1617.049 kb on - strand, within SM_b20603

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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1,614,450 + +1.3
1,614,685 - -1.2
1,614,759 - SM_b21707 0.12 +0.7
1,614,760 + SM_b21707 0.12 -2.0
1,614,760 + SM_b21707 0.12 +1.2
1,614,760 + SM_b21707 0.12 -0.6
1,614,760 + SM_b21707 0.12 -0.4
1,614,760 + SM_b21707 0.12 -1.2
1,614,761 - SM_b21707 0.12 +0.0
1,614,797 - SM_b21707 0.18 +0.1
1,614,797 - SM_b21707 0.18 +0.3
1,614,797 - SM_b21707 0.18 -0.8
1,614,842 - SM_b21707 0.24 -0.2
1,615,026 + SM_b21707 0.50 +0.0
1,615,026 + SM_b21707 0.50 +0.3
1,615,026 + SM_b21707 0.50 +0.6
1,615,026 + SM_b21707 0.50 -0.7
1,615,027 - SM_b21707 0.51 +0.4
1,615,027 - -0.4
1,615,027 - SM_b21707 0.51 +0.8
1,615,027 - SM_b21707 0.51 +0.2
1,615,027 - SM_b21707 0.51 -0.4
1,615,027 - SM_b21707 0.51 -1.2
1,615,027 - SM_b21707 0.51 +0.2
1,615,027 - SM_b21707 0.51 -0.3
1,615,027 - SM_b21707 0.51 -0.3
1,615,028 + SM_b21707 0.51 -1.1
1,615,028 + SM_b21707 0.51 -2.2
1,615,029 - SM_b21707 0.51 +0.2
1,615,029 - SM_b21707 0.51 -0.8
1,615,132 + SM_b21707 0.66 +0.5
1,615,340 - -0.4
1,615,402 + -0.5
1,615,402 + -1.4
1,615,402 + -2.7
1,615,402 + -1.1
1,615,402 + -0.6
1,615,403 - +0.6
1,615,778 - SM_b20602 0.52 -0.1
1,615,778 - SM_b20602 0.52 -2.7
1,615,842 - SM_b20602 0.60 -1.2
1,616,047 - SM_b20602 0.87 -0.3
1,616,110 + -0.0
1,616,110 + +0.2
1,616,111 - +0.3
1,616,111 - -0.3
1,616,248 - +0.1
1,616,351 + SM_b20603 0.17 +1.9
1,616,351 + SM_b20603 0.17 +2.0
1,616,351 + SM_b20603 0.17 +1.2
1,616,352 - SM_b20603 0.17 +0.6
1,616,352 - SM_b20603 0.17 -1.5
1,616,429 + SM_b20603 0.24 -1.2
1,616,429 + SM_b20603 0.24 +0.6
1,616,429 + SM_b20603 0.24 -1.1
1,616,430 - SM_b20603 0.24 -1.0
1,616,430 - SM_b20603 0.24 +0.1
1,616,430 - SM_b20603 0.24 -1.7
1,616,430 - SM_b20603 0.24 +2.0
1,616,496 + SM_b20603 0.30 +0.1
1,616,497 - SM_b20603 0.30 -1.7
1,616,811 + SM_b20603 0.56 -0.6
1,616,811 + SM_b20603 0.56 -0.1
1,616,812 - SM_b20603 0.57 +0.5
1,616,841 + SM_b20603 0.59 +0.0
1,616,841 + SM_b20603 0.59 -0.7
1,616,842 - SM_b20603 0.59 +0.2
1,616,842 - SM_b20603 0.59 -0.8
1,616,842 - SM_b20603 0.59 -0.4
1,617,016 - SM_b20603 0.74 +0.3
1,617,048 + SM_b20603 0.77 -0.4
1,617,049 - SM_b20603 0.77 -2.3
1,617,049 - SM_b20603 0.77 +0.6
1,617,049 - SM_b20603 0.77 -1.9
1,617,049 - SM_b20603 0.77 +1.6

Or see this region's nucleotide sequence