Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20523 and SM_b20525 are separated by 517 nucleotides SM_b20525 and SM_b20527 are separated by 589 nucleotides
SM_b20523: SM_b20523 - hypothetical protein, at 549,220 to 550,428
_b20523
SM_b20525: SM_b20525 - transcriptional regulator, at 550,946 to 551,554
_b20525
SM_b20527: SM_b20527 - hypothetical protein, at 552,144 to 552,578
_b20527
Position (kb) 550
551
552 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 549.976 kb on + strand, within SM_b20523 at 549.977 kb on - strand, within SM_b20523 at 550.097 kb on + strand, within SM_b20523 at 550.097 kb on + strand, within SM_b20523 at 550.097 kb on + strand, within SM_b20523 at 550.097 kb on + strand, within SM_b20523 at 550.098 kb on - strand, within SM_b20523 at 550.098 kb on - strand, within SM_b20523 at 550.257 kb on + strand, within SM_b20523 at 550.298 kb on - strand, within SM_b20523 at 550.442 kb on + strand at 550.443 kb on - strand at 550.444 kb on + strand at 550.445 kb on - strand at 550.445 kb on - strand at 550.445 kb on - strand at 550.445 kb on - strand at 550.499 kb on + strand at 550.499 kb on + strand at 550.499 kb on + strand at 550.500 kb on - strand at 550.500 kb on - strand at 550.500 kb on - strand at 550.524 kb on + strand at 550.524 kb on + strand at 550.525 kb on - strand at 550.805 kb on - strand at 550.805 kb on - strand at 550.831 kb on + strand at 550.832 kb on - strand at 550.832 kb on - strand at 550.898 kb on + strand at 550.898 kb on + strand at 550.898 kb on + strand at 550.899 kb on - strand at 551.049 kb on + strand, within SM_b20525 at 551.073 kb on - strand, within SM_b20525 at 551.100 kb on + strand, within SM_b20525 at 551.101 kb on - strand, within SM_b20525 at 551.101 kb on - strand, within SM_b20525 at 551.206 kb on + strand, within SM_b20525 at 551.206 kb on + strand, within SM_b20525 at 551.206 kb on + strand, within SM_b20525 at 551.206 kb on + strand, within SM_b20525 at 551.394 kb on + strand, within SM_b20525 at 551.394 kb on + strand, within SM_b20525 at 551.394 kb on + strand, within SM_b20525 at 551.395 kb on - strand, within SM_b20525 at 551.395 kb on - strand, within SM_b20525 at 551.395 kb on - strand, within SM_b20525 at 551.404 kb on - strand, within SM_b20525 at 551.483 kb on + strand, within SM_b20525 at 551.494 kb on - strand at 551.544 kb on + strand at 551.544 kb on + strand at 551.545 kb on - strand at 551.601 kb on + strand at 551.682 kb on - strand at 551.711 kb on + strand at 551.711 kb on + strand at 551.899 kb on + strand at 551.900 kb on - strand at 552.092 kb on + strand at 552.093 kb on - strand at 552.209 kb on + strand, within SM_b20527 at 552.210 kb on - strand, within SM_b20527 at 552.353 kb on + strand, within SM_b20527 at 552.353 kb on + strand, within SM_b20527 at 552.353 kb on + strand, within SM_b20527 at 552.353 kb on + strand, within SM_b20527 at 552.354 kb on - strand, within SM_b20527 at 552.354 kb on - strand, within SM_b20527 at 552.406 kb on + strand, within SM_b20527
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 549,976 + SM_b20523 0.63 +0.1 549,977 - SM_b20523 0.63 +0.4 550,097 + SM_b20523 0.73 +0.1 550,097 + SM_b20523 0.73 +1.4 550,097 + SM_b20523 0.73 -0.2 550,097 + SM_b20523 0.73 +2.4 550,098 - SM_b20523 0.73 +0.8 550,098 - SM_b20523 0.73 -3.5 550,257 + SM_b20523 0.86 +1.5 550,298 - SM_b20523 0.89 -0.5 550,442 + -1.2 550,443 - -0.3 550,444 + -0.6 550,445 - -0.2 550,445 - -1.0 550,445 - -2.9 550,445 - -0.4 550,499 + +0.0 550,499 + -0.6 550,499 + +2.2 550,500 - -0.8 550,500 - -3.6 550,500 - -0.5 550,524 + -0.3 550,524 + +0.3 550,525 - +0.2 550,805 - +0.4 550,805 - +0.4 550,831 + +1.3 550,832 - -1.2 550,832 - +0.3 550,898 + +1.1 550,898 + +0.8 550,898 + -0.2 550,899 - +1.0 551,049 + SM_b20525 0.17 -0.1 551,073 - SM_b20525 0.21 -1.8 551,100 + SM_b20525 0.25 +1.0 551,101 - SM_b20525 0.25 -0.0 551,101 - SM_b20525 0.25 +2.0 551,206 + SM_b20525 0.43 +1.6 551,206 + SM_b20525 0.43 -0.9 551,206 + SM_b20525 0.43 +4.3 551,206 + SM_b20525 0.43 -0.9 551,394 + SM_b20525 0.74 -0.1 551,394 + SM_b20525 0.74 -0.8 551,394 + SM_b20525 0.74 -0.2 551,395 - SM_b20525 0.74 +1.6 551,395 - SM_b20525 0.74 -0.2 551,395 - SM_b20525 0.74 +0.1 551,404 - SM_b20525 0.75 -0.1 551,483 + SM_b20525 0.88 +1.3 551,494 - +0.7 551,544 + -0.3 551,544 + +0.1 551,545 - +0.3 551,601 + +1.4 551,682 - -0.0 551,711 + +0.7 551,711 + -0.9 551,899 + -0.8 551,900 - -1.1 552,092 + +0.0 552,093 - -0.3 552,209 + SM_b20527 0.15 -1.0 552,210 - SM_b20527 0.15 -0.6 552,353 + SM_b20527 0.48 -0.1 552,353 + SM_b20527 0.48 +1.9 552,353 + SM_b20527 0.48 +0.5 552,353 + SM_b20527 0.48 -1.4 552,354 - SM_b20527 0.48 -0.1 552,354 - SM_b20527 0.48 -1.5 552,406 + SM_b20527 0.60 -0.4
Or see this region's nucleotide sequence