Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20510 and SM_b20511 are separated by 30 nucleotides SM_b20511 and SM_b22021 are separated by 348 nucleotides SM_b22021 and SM_b20513 are separated by 94 nucleotides
SM_b20510: SM_b20510 - galactonate dehydratase, at 532,438 to 533,586
_b20510
SM_b20511: SM_b20511 - short-chain dehydrogenase, at 533,617 to 534,396
_b20511
SM_b22021: SM_b22021 - hypothetical protein, at 534,745 to 534,999
_b22021
SM_b20513: SM_b20513 - hypothetical protein, at 535,094 to 536,020
_b20513
Position (kb) 533
534
535 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 532.674 kb on + strand, within SM_b20510 at 532.674 kb on + strand, within SM_b20510 at 532.675 kb on - strand, within SM_b20510 at 532.675 kb on - strand, within SM_b20510 at 532.786 kb on + strand, within SM_b20510 at 532.787 kb on - strand, within SM_b20510 at 532.787 kb on - strand, within SM_b20510 at 532.787 kb on - strand, within SM_b20510 at 532.873 kb on - strand, within SM_b20510 at 532.873 kb on - strand, within SM_b20510 at 532.913 kb on - strand, within SM_b20510 at 533.150 kb on - strand, within SM_b20510 at 533.270 kb on - strand, within SM_b20510 at 533.270 kb on - strand, within SM_b20510 at 533.347 kb on + strand, within SM_b20510 at 533.347 kb on + strand, within SM_b20510 at 533.347 kb on + strand, within SM_b20510 at 533.348 kb on - strand, within SM_b20510 at 533.348 kb on - strand, within SM_b20510 at 533.349 kb on + strand, within SM_b20510 at 533.350 kb on - strand, within SM_b20510 at 533.350 kb on - strand, within SM_b20510 at 533.414 kb on - strand, within SM_b20510 at 533.440 kb on + strand, within SM_b20510 at 533.503 kb on + strand at 533.808 kb on + strand, within SM_b20511 at 533.811 kb on + strand, within SM_b20511 at 533.812 kb on - strand, within SM_b20511 at 533.952 kb on + strand, within SM_b20511 at 534.136 kb on + strand, within SM_b20511 at 534.136 kb on + strand, within SM_b20511 at 534.178 kb on + strand, within SM_b20511 at 534.205 kb on + strand, within SM_b20511 at 534.462 kb on + strand at 534.464 kb on + strand at 534.465 kb on - strand at 534.508 kb on + strand at 534.621 kb on + strand at 534.621 kb on + strand at 534.621 kb on + strand at 534.622 kb on - strand at 534.778 kb on + strand, within SM_b22021 at 534.778 kb on + strand, within SM_b22021 at 534.779 kb on - strand, within SM_b22021 at 534.779 kb on - strand, within SM_b22021 at 534.925 kb on + strand, within SM_b22021 at 534.926 kb on - strand, within SM_b22021 at 534.926 kb on - strand, within SM_b22021 at 534.928 kb on + strand, within SM_b22021 at 534.928 kb on + strand, within SM_b22021 at 534.929 kb on - strand, within SM_b22021 at 535.109 kb on + strand at 535.110 kb on - strand at 535.111 kb on + strand at 535.113 kb on + strand at 535.113 kb on + strand at 535.113 kb on + strand at 535.113 kb on + strand at 535.113 kb on + strand at 535.113 kb on + strand at 535.114 kb on - strand at 535.114 kb on - strand at 535.114 kb on - strand at 535.114 kb on - strand at 535.114 kb on - strand at 535.127 kb on + strand at 535.128 kb on - strand at 535.204 kb on + strand, within SM_b20513 at 535.204 kb on + strand, within SM_b20513 at 535.205 kb on - strand, within SM_b20513
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 532,674 + SM_b20510 0.21 +1.6 532,674 + SM_b20510 0.21 -0.6 532,675 - SM_b20510 0.21 -2.3 532,675 - SM_b20510 0.21 -1.2 532,786 + SM_b20510 0.30 +0.9 532,787 - SM_b20510 0.30 +0.2 532,787 - SM_b20510 0.30 -0.1 532,787 - SM_b20510 0.30 +0.4 532,873 - SM_b20510 0.38 -0.9 532,873 - SM_b20510 0.38 -0.7 532,913 - SM_b20510 0.41 -0.0 533,150 - SM_b20510 0.62 -0.1 533,270 - SM_b20510 0.72 -0.0 533,270 - SM_b20510 0.72 +0.0 533,347 + SM_b20510 0.79 +0.2 533,347 + SM_b20510 0.79 +0.8 533,347 + SM_b20510 0.79 +1.5 533,348 - SM_b20510 0.79 +0.9 533,348 - SM_b20510 0.79 -1.3 533,349 + SM_b20510 0.79 -0.2 533,350 - SM_b20510 0.79 +0.1 533,350 - SM_b20510 0.79 +0.2 533,414 - SM_b20510 0.85 -0.6 533,440 + SM_b20510 0.87 -0.5 533,503 + -2.0 533,808 + SM_b20511 0.24 +0.3 533,811 + SM_b20511 0.25 -2.4 533,812 - SM_b20511 0.25 -2.7 533,952 + SM_b20511 0.43 -2.0 534,136 + SM_b20511 0.67 +0.6 534,136 + SM_b20511 0.67 +1.1 534,178 + SM_b20511 0.72 -0.7 534,205 + SM_b20511 0.75 +0.6 534,462 + -2.1 534,464 + -0.2 534,465 - -0.0 534,508 + +0.3 534,621 + -0.2 534,621 + +0.2 534,621 + -1.3 534,622 - +0.9 534,778 + SM_b22021 0.13 +0.2 534,778 + SM_b22021 0.13 -0.4 534,779 - SM_b22021 0.13 -0.9 534,779 - SM_b22021 0.13 -0.4 534,925 + SM_b22021 0.71 +4.2 534,926 - SM_b22021 0.71 +1.5 534,926 - SM_b22021 0.71 -1.2 534,928 + SM_b22021 0.72 -0.4 534,928 + SM_b22021 0.72 +1.7 534,929 - SM_b22021 0.72 -0.9 535,109 + +1.1 535,110 - +1.1 535,111 + -0.1 535,113 + +1.7 535,113 + +0.0 535,113 + +2.1 535,113 + -0.4 535,113 + -1.5 535,113 + +1.1 535,114 - -0.1 535,114 - -0.3 535,114 - -2.5 535,114 - +0.1 535,114 - -1.3 535,127 + -0.5 535,128 - -0.0 535,204 + SM_b20513 0.12 +0.1 535,204 + SM_b20513 0.12 -2.1 535,205 - SM_b20513 0.12 -1.3
Or see this region's nucleotide sequence