Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20477 and SM_b20478 overlap by 4 nucleotides SM_b20478 and SM_b20479 overlap by 4 nucleotides SM_b20479 and SM_b20480 are separated by 6 nucleotides
SM_b20477: SM_b20477 - peptide ABC transporter permease, at 490,466 to 491,413
_b20477
SM_b20478: SM_b20478 - dipeptide ABC transporter permease and ATP-binding protein, at 491,410 to 493,212
_b20478
SM_b20479: SM_b20479 - dipeptide ABC transporter ATP-binding protein, at 493,209 to 494,006
_b20479
SM_b20480: SM_b20480 - transcriptional regulator, at 494,013 to 494,795
_b20480
Position (kb) 491
492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 490.462 kb on - strand at 490.475 kb on + strand at 490.476 kb on - strand at 490.476 kb on - strand at 490.589 kb on + strand, within SM_b20477 at 490.590 kb on - strand, within SM_b20477 at 490.922 kb on + strand, within SM_b20477 at 490.922 kb on + strand, within SM_b20477 at 490.923 kb on - strand, within SM_b20477 at 490.923 kb on - strand, within SM_b20477 at 490.923 kb on - strand, within SM_b20477 at 490.967 kb on + strand, within SM_b20477 at 490.967 kb on + strand, within SM_b20477 at 490.967 kb on + strand, within SM_b20477 at 490.968 kb on - strand, within SM_b20477 at 490.968 kb on - strand, within SM_b20477 at 491.058 kb on + strand, within SM_b20477 at 491.059 kb on - strand, within SM_b20477 at 491.059 kb on - strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.106 kb on - strand, within SM_b20477 at 491.106 kb on - strand, within SM_b20477 at 491.154 kb on - strand, within SM_b20477 at 491.317 kb on - strand, within SM_b20477 at 491.348 kb on + strand at 491.348 kb on + strand at 491.348 kb on + strand at 491.349 kb on - strand at 491.654 kb on + strand, within SM_b20478 at 491.655 kb on - strand, within SM_b20478 at 491.655 kb on - strand, within SM_b20478 at 491.821 kb on + strand, within SM_b20478 at 491.882 kb on - strand, within SM_b20478 at 491.902 kb on - strand, within SM_b20478 at 492.003 kb on + strand, within SM_b20478 at 492.004 kb on - strand, within SM_b20478 at 492.004 kb on - strand, within SM_b20478 at 492.584 kb on + strand, within SM_b20478 at 492.585 kb on - strand, within SM_b20478 at 492.637 kb on + strand, within SM_b20478 at 492.637 kb on + strand, within SM_b20478 at 492.637 kb on + strand, within SM_b20478 at 492.638 kb on - strand, within SM_b20478 at 492.677 kb on - strand, within SM_b20478 at 492.808 kb on + strand, within SM_b20478 at 492.809 kb on - strand, within SM_b20478 at 493.082 kb on + strand at 493.106 kb on - strand at 493.295 kb on - strand, within SM_b20479 at 493.295 kb on - strand, within SM_b20479 at 493.497 kb on + strand, within SM_b20479 at 493.497 kb on + strand, within SM_b20479 at 493.497 kb on + strand, within SM_b20479 at 493.497 kb on + strand, within SM_b20479 at 493.497 kb on + strand, within SM_b20479 at 493.498 kb on - strand, within SM_b20479 at 493.498 kb on - strand, within SM_b20479 at 493.498 kb on - strand, within SM_b20479 at 493.498 kb on - strand, within SM_b20479 at 493.498 kb on - strand, within SM_b20479 at 493.649 kb on + strand, within SM_b20479 at 493.833 kb on + strand, within SM_b20479 at 493.833 kb on + strand, within SM_b20479 at 493.834 kb on - strand, within SM_b20479 at 493.834 kb on - strand, within SM_b20479 at 493.896 kb on + strand, within SM_b20479 at 493.897 kb on - strand, within SM_b20479 at 493.959 kb on + strand at 493.959 kb on + strand at 493.960 kb on - strand at 493.962 kb on - strand at 494.084 kb on + strand at 494.085 kb on - strand at 494.128 kb on - strand, within SM_b20480
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 490,462 - -0.4 490,475 + -1.3 490,476 - -0.7 490,476 - +1.0 490,589 + SM_b20477 0.13 +0.4 490,590 - SM_b20477 0.13 +1.6 490,922 + SM_b20477 0.48 -0.7 490,922 + SM_b20477 0.48 +0.7 490,923 - SM_b20477 0.48 +0.0 490,923 - SM_b20477 0.48 -0.1 490,923 - SM_b20477 0.48 +0.2 490,967 + SM_b20477 0.53 -0.4 490,967 + SM_b20477 0.53 -0.7 490,967 + SM_b20477 0.53 -0.2 490,968 - SM_b20477 0.53 -0.3 490,968 - SM_b20477 0.53 +0.5 491,058 + SM_b20477 0.62 +0.2 491,059 - SM_b20477 0.63 +0.8 491,059 - SM_b20477 0.63 +0.6 491,105 + SM_b20477 0.67 -2.2 491,105 + SM_b20477 0.67 +0.3 491,105 + SM_b20477 0.67 -0.3 491,105 + SM_b20477 0.67 +1.1 491,105 + SM_b20477 0.67 -0.0 491,105 + SM_b20477 0.67 +0.0 491,105 + SM_b20477 0.67 -0.1 491,106 - SM_b20477 0.68 -1.2 491,106 - SM_b20477 0.68 -0.4 491,154 - SM_b20477 0.73 -0.5 491,317 - SM_b20477 0.90 -0.7 491,348 + -0.1 491,348 + -0.0 491,348 + -0.1 491,349 - +1.7 491,654 + SM_b20478 0.14 +0.1 491,655 - SM_b20478 0.14 +0.6 491,655 - SM_b20478 0.14 +0.9 491,821 + SM_b20478 0.23 -0.1 491,882 - SM_b20478 0.26 +2.3 491,902 - SM_b20478 0.27 +1.1 492,003 + SM_b20478 0.33 +0.1 492,004 - SM_b20478 0.33 -1.5 492,004 - SM_b20478 0.33 -0.1 492,584 + SM_b20478 0.65 -0.1 492,585 - SM_b20478 0.65 +0.5 492,637 + SM_b20478 0.68 +0.1 492,637 + SM_b20478 0.68 +2.5 492,637 + SM_b20478 0.68 -0.9 492,638 - SM_b20478 0.68 +0.3 492,677 - SM_b20478 0.70 -2.1 492,808 + SM_b20478 0.78 -0.2 492,809 - SM_b20478 0.78 +0.2 493,082 + +0.3 493,106 - +1.0 493,295 - SM_b20479 0.11 +0.0 493,295 - SM_b20479 0.11 +1.1 493,497 + SM_b20479 0.36 -3.6 493,497 + SM_b20479 0.36 +0.4 493,497 + SM_b20479 0.36 -0.5 493,497 + SM_b20479 0.36 -0.3 493,497 + SM_b20479 0.36 +0.3 493,498 - SM_b20479 0.36 +0.8 493,498 - SM_b20479 0.36 -0.1 493,498 - SM_b20479 0.36 +0.5 493,498 - SM_b20479 0.36 +0.3 493,498 - SM_b20479 0.36 -0.0 493,649 + SM_b20479 0.55 -3.7 493,833 + SM_b20479 0.78 -0.5 493,833 + SM_b20479 0.78 -0.1 493,834 - SM_b20479 0.78 -0.2 493,834 - SM_b20479 0.78 -0.3 493,896 + SM_b20479 0.86 +0.3 493,897 - SM_b20479 0.86 +0.1 493,959 + -0.2 493,959 + -0.4 493,960 - +1.3 493,962 - -0.6 494,084 + -0.9 494,085 - +0.1 494,128 - SM_b20480 0.15 -1.2
Or see this region's nucleotide sequence