Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20450 and SM_b20451 are separated by 4 nucleotides SM_b20451 and SM_b20452 are separated by 14 nucleotides SM_b20452 and SM_b20453 are separated by 35 nucleotides SM_b20453 and SM_b20454 are separated by 280 nucleotides SM_b20454 and SM_b20455 are separated by 104 nucleotides
SM_b20450: SM_b20450 - regulatory protein, at 462,325 to 464,685
_b20450
SM_b20451: SM_b20451 - hypothetical protein, at 464,690 to 465,253
_b20451
SM_b20452: SM_b20452 - hypothetical protein, at 465,268 to 465,606
_b20452
SM_b20453: SM_b20453 - gluconolactonase, at 465,642 to 466,553
_b20453
SM_b20454: SM_b20454 - hypothetical protein, at 466,834 to 467,253
_b20454
SM_b20455: SM_b20455 - transcriptional regulator, at 467,358 to 467,972
_b20455
Position (kb) 465
466
467 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 464.700 kb on + strand at 464.700 kb on + strand at 464.700 kb on + strand at 464.701 kb on - strand at 464.701 kb on - strand at 464.701 kb on - strand at 464.701 kb on - strand at 464.701 kb on - strand at 464.701 kb on - strand at 464.701 kb on - strand at 464.702 kb on + strand at 464.702 kb on + strand at 464.702 kb on + strand at 464.703 kb on - strand at 464.703 kb on - strand at 464.703 kb on - strand at 464.886 kb on - strand, within SM_b20451 at 465.042 kb on + strand, within SM_b20451 at 465.043 kb on - strand, within SM_b20451 at 465.043 kb on - strand, within SM_b20451 at 465.046 kb on - strand, within SM_b20451 at 465.049 kb on - strand, within SM_b20451 at 465.082 kb on - strand, within SM_b20451 at 465.152 kb on + strand, within SM_b20451 at 465.153 kb on - strand, within SM_b20451 at 465.218 kb on + strand at 465.218 kb on + strand at 465.218 kb on + strand at 465.218 kb on + strand at 465.218 kb on + strand at 465.219 kb on - strand at 465.219 kb on - strand at 465.219 kb on - strand at 465.227 kb on - strand at 465.319 kb on + strand, within SM_b20452 at 465.319 kb on + strand, within SM_b20452 at 465.319 kb on + strand, within SM_b20452 at 465.320 kb on - strand, within SM_b20452 at 465.388 kb on - strand, within SM_b20452 at 465.388 kb on - strand, within SM_b20452 at 465.513 kb on + strand, within SM_b20452 at 465.599 kb on + strand at 465.644 kb on - strand at 465.673 kb on + strand at 465.674 kb on - strand at 465.674 kb on - strand at 465.682 kb on + strand at 465.683 kb on - strand at 465.738 kb on + strand, within SM_b20453 at 465.739 kb on - strand, within SM_b20453 at 465.906 kb on + strand, within SM_b20453 at 465.939 kb on - strand, within SM_b20453 at 465.981 kb on - strand, within SM_b20453 at 465.981 kb on - strand, within SM_b20453 at 465.981 kb on - strand, within SM_b20453 at 465.983 kb on - strand, within SM_b20453 at 466.123 kb on + strand, within SM_b20453 at 466.123 kb on + strand, within SM_b20453 at 466.123 kb on + strand, within SM_b20453 at 466.124 kb on - strand, within SM_b20453 at 466.141 kb on + strand, within SM_b20453 at 466.141 kb on + strand, within SM_b20453 at 466.142 kb on - strand, within SM_b20453 at 466.142 kb on - strand, within SM_b20453 at 466.219 kb on + strand, within SM_b20453 at 466.219 kb on + strand, within SM_b20453 at 466.220 kb on - strand, within SM_b20453 at 466.220 kb on - strand, within SM_b20453 at 466.220 kb on - strand, within SM_b20453 at 466.334 kb on - strand, within SM_b20453 at 466.403 kb on + strand, within SM_b20453 at 466.471 kb on + strand at 466.535 kb on - strand at 466.641 kb on + strand at 466.641 kb on + strand at 466.641 kb on + strand at 466.642 kb on - strand at 466.673 kb on + strand at 466.673 kb on + strand at 466.673 kb on + strand at 466.674 kb on - strand at 466.674 kb on - strand at 466.674 kb on - strand at 466.722 kb on - strand at 466.808 kb on + strand at 466.808 kb on + strand at 466.809 kb on - strand at 466.973 kb on + strand, within SM_b20454 at 466.973 kb on + strand, within SM_b20454 at 466.974 kb on - strand, within SM_b20454 at 467.055 kb on - strand, within SM_b20454 at 467.055 kb on - strand, within SM_b20454 at 467.063 kb on - strand, within SM_b20454 at 467.176 kb on + strand, within SM_b20454 at 467.177 kb on - strand, within SM_b20454 at 467.183 kb on - strand, within SM_b20454 at 467.183 kb on - strand, within SM_b20454 at 467.190 kb on - strand, within SM_b20454 at 467.213 kb on + strand at 467.213 kb on + strand at 467.214 kb on - strand at 467.294 kb on - strand at 467.294 kb on - strand at 467.294 kb on - strand at 467.340 kb on + strand at 467.341 kb on - strand at 467.341 kb on - strand at 467.341 kb on - strand at 467.359 kb on + strand at 467.360 kb on - strand at 467.360 kb on - strand at 467.360 kb on - strand at 467.360 kb on - strand at 467.431 kb on + strand, within SM_b20455 at 467.431 kb on + strand, within SM_b20455 at 467.472 kb on + strand, within SM_b20455 at 467.473 kb on - strand, within SM_b20455 at 467.483 kb on - strand, within SM_b20455
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 464,700 + +0.5 464,700 + -1.7 464,700 + +0.5 464,701 - -0.0 464,701 - -0.7 464,701 - -1.5 464,701 - +0.1 464,701 - +0.3 464,701 - -0.5 464,701 - +0.6 464,702 + +0.8 464,702 + +0.0 464,702 + +0.3 464,703 - +0.2 464,703 - -0.2 464,703 - -0.5 464,886 - SM_b20451 0.35 -1.0 465,042 + SM_b20451 0.62 +0.7 465,043 - SM_b20451 0.63 -1.4 465,043 - SM_b20451 0.63 +0.2 465,046 - SM_b20451 0.63 -0.3 465,049 - SM_b20451 0.64 +0.1 465,082 - SM_b20451 0.70 -0.2 465,152 + SM_b20451 0.82 +0.8 465,153 - SM_b20451 0.82 -0.8 465,218 + +0.4 465,218 + +0.0 465,218 + -0.5 465,218 + +0.6 465,218 + +2.3 465,219 - -1.2 465,219 - +0.2 465,219 - -0.2 465,227 - -0.3 465,319 + SM_b20452 0.15 -0.4 465,319 + SM_b20452 0.15 -1.8 465,319 + SM_b20452 0.15 -1.1 465,320 - SM_b20452 0.15 -1.2 465,388 - SM_b20452 0.35 -0.5 465,388 - SM_b20452 0.35 -2.1 465,513 + SM_b20452 0.72 -1.1 465,599 + -2.4 465,644 - -0.7 465,673 + +0.3 465,674 - +0.2 465,674 - -2.4 465,682 + -2.2 465,683 - +0.8 465,738 + SM_b20453 0.11 +0.9 465,739 - SM_b20453 0.11 +0.9 465,906 + SM_b20453 0.29 -0.3 465,939 - SM_b20453 0.33 -0.2 465,981 - SM_b20453 0.37 +0.0 465,981 - SM_b20453 0.37 +0.4 465,981 - SM_b20453 0.37 -0.9 465,983 - SM_b20453 0.37 -1.2 466,123 + SM_b20453 0.53 +0.4 466,123 + SM_b20453 0.53 +0.5 466,123 + SM_b20453 0.53 +1.0 466,124 - SM_b20453 0.53 +0.3 466,141 + SM_b20453 0.55 +0.4 466,141 + SM_b20453 0.55 +0.3 466,142 - SM_b20453 0.55 +0.9 466,142 - SM_b20453 0.55 -0.3 466,219 + SM_b20453 0.63 -1.3 466,219 + SM_b20453 0.63 +0.7 466,220 - SM_b20453 0.63 +0.3 466,220 - SM_b20453 0.63 +0.1 466,220 - SM_b20453 0.63 -1.1 466,334 - SM_b20453 0.76 +1.7 466,403 + SM_b20453 0.83 -2.9 466,471 + +2.3 466,535 - +0.3 466,641 + +0.2 466,641 + -0.8 466,641 + -0.7 466,642 - +0.8 466,673 + -1.8 466,673 + -0.2 466,673 + +0.8 466,674 - +1.1 466,674 - +1.0 466,674 - +0.2 466,722 - +0.6 466,808 + +1.5 466,808 + +0.5 466,809 - +0.9 466,973 + SM_b20454 0.33 -0.5 466,973 + SM_b20454 0.33 -0.8 466,974 - SM_b20454 0.33 +1.1 467,055 - SM_b20454 0.53 +1.1 467,055 - SM_b20454 0.53 +2.1 467,063 - SM_b20454 0.55 +0.6 467,176 + SM_b20454 0.81 -0.8 467,177 - SM_b20454 0.82 -0.7 467,183 - SM_b20454 0.83 +0.3 467,183 - SM_b20454 0.83 -1.7 467,190 - SM_b20454 0.85 +1.8 467,213 + +1.3 467,213 + +0.4 467,214 - +0.5 467,294 - -2.0 467,294 - -0.2 467,294 - -2.9 467,340 + -0.7 467,341 - +1.0 467,341 - -0.0 467,341 - +0.7 467,359 + -0.6 467,360 - +0.3 467,360 - +2.0 467,360 - -0.9 467,360 - +0.5 467,431 + SM_b20455 0.12 -0.8 467,431 + SM_b20455 0.12 -0.0 467,472 + SM_b20455 0.19 +0.2 467,473 - SM_b20455 0.19 -0.9 467,483 - SM_b20455 0.20 -0.4
Or see this region's nucleotide sequence