Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20447 and SM_b20448 are separated by 75 nucleotides SM_b20448 and SM_b20449 are separated by 116 nucleotides SM_b20449 and SM_b20450 overlap by 4 nucleotides
SM_b20447: SM_b20447 - hypothetical protein, at 458,865 to 460,559
_b20447
SM_b20448: SM_b20448 - hypothetical protein, at 460,635 to 461,153
_b20448
SM_b20449: SM_b20449 - methyltransferase, at 461,270 to 462,328
_b20449
SM_b20450: SM_b20450 - regulatory protein, at 462,325 to 464,685
_b20450
Position (kb) 461
462
463 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 460.305 kb on + strand, within SM_b20447 at 460.306 kb on - strand, within SM_b20447 at 460.591 kb on - strand at 460.766 kb on - strand, within SM_b20448 at 460.787 kb on + strand, within SM_b20448 at 460.787 kb on + strand, within SM_b20448 at 460.831 kb on + strand at 460.832 kb on - strand, within SM_b20448 at 460.953 kb on - strand, within SM_b20448 at 460.998 kb on + strand, within SM_b20448 at 461.155 kb on + strand at 461.156 kb on - strand at 461.265 kb on + strand at 461.266 kb on - strand at 461.275 kb on + strand at 461.276 kb on - strand at 461.276 kb on - strand at 461.276 kb on - strand at 461.309 kb on + strand at 461.309 kb on + strand at 461.309 kb on + strand at 461.310 kb on - strand at 461.310 kb on - strand at 461.310 kb on - strand at 461.351 kb on + strand at 461.351 kb on + strand at 461.352 kb on - strand at 461.498 kb on + strand, within SM_b20449 at 461.646 kb on + strand, within SM_b20449 at 461.646 kb on + strand, within SM_b20449 at 461.646 kb on + strand, within SM_b20449 at 461.646 kb on + strand, within SM_b20449 at 461.646 kb on + strand, within SM_b20449 at 461.646 kb on + strand, within SM_b20449 at 461.646 kb on + strand, within SM_b20449 at 461.646 kb on + strand, within SM_b20449 at 461.646 kb on + strand, within SM_b20449 at 461.646 kb on + strand, within SM_b20449 at 461.646 kb on + strand, within SM_b20449 at 461.646 kb on + strand, within SM_b20449 at 461.647 kb on - strand, within SM_b20449 at 461.647 kb on - strand, within SM_b20449 at 461.647 kb on - strand, within SM_b20449 at 461.647 kb on - strand, within SM_b20449 at 461.647 kb on - strand, within SM_b20449 at 461.647 kb on - strand, within SM_b20449 at 461.647 kb on - strand, within SM_b20449 at 461.786 kb on + strand, within SM_b20449 at 461.786 kb on + strand, within SM_b20449 at 461.786 kb on + strand, within SM_b20449 at 461.786 kb on + strand, within SM_b20449 at 461.786 kb on + strand, within SM_b20449 at 461.788 kb on + strand, within SM_b20449 at 461.788 kb on + strand, within SM_b20449 at 461.788 kb on + strand, within SM_b20449 at 461.788 kb on + strand, within SM_b20449 at 461.788 kb on + strand, within SM_b20449 at 461.789 kb on - strand, within SM_b20449 at 461.789 kb on - strand, within SM_b20449 at 461.789 kb on - strand, within SM_b20449 at 461.789 kb on - strand, within SM_b20449 at 461.792 kb on + strand, within SM_b20449 at 461.792 kb on + strand, within SM_b20449 at 461.792 kb on + strand, within SM_b20449 at 461.793 kb on - strand, within SM_b20449 at 461.793 kb on - strand, within SM_b20449 at 461.793 kb on - strand, within SM_b20449 at 461.931 kb on - strand, within SM_b20449 at 461.932 kb on + strand, within SM_b20449 at 461.932 kb on + strand, within SM_b20449 at 461.932 kb on + strand, within SM_b20449 at 461.932 kb on + strand, within SM_b20449 at 461.932 kb on + strand, within SM_b20449 at 461.933 kb on - strand, within SM_b20449 at 461.933 kb on - strand, within SM_b20449 at 461.933 kb on - strand, within SM_b20449 at 461.933 kb on - strand, within SM_b20449 at 461.934 kb on + strand, within SM_b20449 at 461.934 kb on + strand, within SM_b20449 at 461.935 kb on - strand, within SM_b20449 at 461.996 kb on + strand, within SM_b20449 at 461.997 kb on - strand, within SM_b20449 at 461.997 kb on - strand, within SM_b20449 at 462.176 kb on + strand, within SM_b20449 at 462.177 kb on - strand, within SM_b20449 at 462.195 kb on + strand, within SM_b20449 at 462.282 kb on - strand at 462.518 kb on - strand at 462.518 kb on - strand at 462.518 kb on - strand at 462.519 kb on + strand at 462.530 kb on - strand at 462.530 kb on - strand at 462.880 kb on + strand, within SM_b20450 at 462.880 kb on + strand, within SM_b20450 at 462.881 kb on - strand, within SM_b20450 at 462.881 kb on - strand, within SM_b20450 at 462.881 kb on - strand, within SM_b20450 at 462.881 kb on - strand, within SM_b20450 at 462.881 kb on - strand, within SM_b20450 at 462.883 kb on + strand, within SM_b20450 at 462.883 kb on + strand, within SM_b20450 at 462.883 kb on + strand, within SM_b20450 at 462.883 kb on + strand, within SM_b20450 at 462.885 kb on + strand, within SM_b20450 at 462.886 kb on - strand, within SM_b20450 at 462.926 kb on - strand, within SM_b20450 at 462.926 kb on - strand, within SM_b20450 at 462.928 kb on - strand, within SM_b20450 at 463.009 kb on + strand, within SM_b20450 at 463.085 kb on - strand, within SM_b20450 at 463.085 kb on - strand, within SM_b20450 at 463.085 kb on - strand, within SM_b20450 at 463.086 kb on + strand, within SM_b20450 at 463.218 kb on + strand, within SM_b20450
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 460,305 + SM_b20447 0.85 -0.9 460,306 - SM_b20447 0.85 -0.8 460,591 - -0.0 460,766 - SM_b20448 0.25 -0.5 460,787 + SM_b20448 0.29 +0.5 460,787 + SM_b20448 0.29 +0.5 460,831 + -1.5 460,832 - SM_b20448 0.38 +0.5 460,953 - SM_b20448 0.61 -0.5 460,998 + SM_b20448 0.70 -1.1 461,155 + +0.2 461,156 - +2.4 461,265 + -0.9 461,266 - -4.5 461,275 + -0.6 461,276 - -1.1 461,276 - -0.4 461,276 - -0.9 461,309 + +1.2 461,309 + +0.5 461,309 + +0.1 461,310 - -1.7 461,310 - -2.0 461,310 - -1.5 461,351 + +0.7 461,351 + +0.5 461,352 - +0.3 461,498 + SM_b20449 0.22 -0.3 461,646 + SM_b20449 0.36 +0.7 461,646 + SM_b20449 0.36 +1.0 461,646 + SM_b20449 0.36 -0.3 461,646 + SM_b20449 0.36 -0.3 461,646 + SM_b20449 0.36 +0.7 461,646 + SM_b20449 0.36 -1.2 461,646 + SM_b20449 0.36 -0.2 461,646 + SM_b20449 0.36 +0.3 461,646 + SM_b20449 0.36 +1.0 461,646 + SM_b20449 0.36 -1.2 461,646 + SM_b20449 0.36 +0.2 461,646 + SM_b20449 0.36 +0.2 461,647 - SM_b20449 0.36 +0.7 461,647 - SM_b20449 0.36 -0.5 461,647 - SM_b20449 0.36 -2.9 461,647 - SM_b20449 0.36 -1.6 461,647 - SM_b20449 0.36 -0.3 461,647 - SM_b20449 0.36 +3.8 461,647 - SM_b20449 0.36 +0.5 461,786 + SM_b20449 0.49 -0.8 461,786 + SM_b20449 0.49 +0.6 461,786 + SM_b20449 0.49 +0.3 461,786 + SM_b20449 0.49 +0.1 461,786 + SM_b20449 0.49 -0.3 461,788 + SM_b20449 0.49 -0.3 461,788 + SM_b20449 0.49 -0.6 461,788 + SM_b20449 0.49 +0.2 461,788 + SM_b20449 0.49 -1.9 461,788 + SM_b20449 0.49 +0.1 461,789 - SM_b20449 0.49 -0.6 461,789 - SM_b20449 0.49 -0.2 461,789 - SM_b20449 0.49 -0.8 461,789 - SM_b20449 0.49 +0.7 461,792 + SM_b20449 0.49 +0.3 461,792 + SM_b20449 0.49 -0.6 461,792 + SM_b20449 0.49 -0.2 461,793 - SM_b20449 0.49 +1.1 461,793 - SM_b20449 0.49 -1.5 461,793 - SM_b20449 0.49 -0.1 461,931 - SM_b20449 0.62 -1.4 461,932 + SM_b20449 0.63 -0.7 461,932 + SM_b20449 0.63 +1.3 461,932 + SM_b20449 0.63 -2.0 461,932 + SM_b20449 0.63 -1.0 461,932 + SM_b20449 0.63 -0.9 461,933 - SM_b20449 0.63 -2.2 461,933 - SM_b20449 0.63 -0.4 461,933 - SM_b20449 0.63 -1.8 461,933 - SM_b20449 0.63 -2.4 461,934 + SM_b20449 0.63 -0.6 461,934 + SM_b20449 0.63 -1.5 461,935 - SM_b20449 0.63 -0.5 461,996 + SM_b20449 0.69 -1.7 461,997 - SM_b20449 0.69 -1.0 461,997 - SM_b20449 0.69 -2.2 462,176 + SM_b20449 0.86 -2.4 462,177 - SM_b20449 0.86 -1.2 462,195 + SM_b20449 0.87 -3.2 462,282 - -0.6 462,518 - +0.1 462,518 - -0.8 462,518 - -0.1 462,519 + -0.5 462,530 - -1.9 462,530 - -1.2 462,880 + SM_b20450 0.24 -0.1 462,880 + SM_b20450 0.24 -1.8 462,881 - SM_b20450 0.24 -2.9 462,881 - SM_b20450 0.24 -0.5 462,881 - SM_b20450 0.24 -0.6 462,881 - SM_b20450 0.24 -1.2 462,881 - SM_b20450 0.24 -1.1 462,883 + SM_b20450 0.24 +0.7 462,883 + SM_b20450 0.24 -1.9 462,883 + SM_b20450 0.24 -3.4 462,883 + SM_b20450 0.24 -0.0 462,885 + SM_b20450 0.24 -1.4 462,886 - SM_b20450 0.24 +0.1 462,926 - SM_b20450 0.25 -0.2 462,926 - SM_b20450 0.25 -0.9 462,928 - SM_b20450 0.26 -1.9 463,009 + SM_b20450 0.29 +0.1 463,085 - SM_b20450 0.32 -0.2 463,085 - SM_b20450 0.32 -1.9 463,085 - SM_b20450 0.32 -1.1 463,086 + SM_b20450 0.32 -2.2 463,218 + SM_b20450 0.38 -1.7
Or see this region's nucleotide sequence