Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20432 and SM_b20433 overlap by 4 nucleotides SM_b20433 and SM_b20434 are separated by 44 nucleotides
SM_b20431: SM_b20431 - arylmalonate decarboxylase, at 445,567 to 446,352
_b20431
SM_b20432: SM_b20432 - threonine dehydratase, at 446,349 to 447,353
_b20432
SM_b20433: SM_b20433 - ectoine utilization protein EutC, at 447,350 to 448,339
_b20433
SM_b20434: SM_b20434 - hydrolasepeptidase, at 448,384 to 449,565
_b20434
Position (kb) 447
448
449 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 446.417 kb on - strand at 446.417 kb on - strand at 446.420 kb on + strand at 446.480 kb on - strand, within SM_b20432 at 446.508 kb on - strand, within SM_b20432 at 446.645 kb on + strand, within SM_b20432 at 446.884 kb on + strand, within SM_b20432 at 446.959 kb on + strand, within SM_b20432 at 446.959 kb on + strand, within SM_b20432 at 446.959 kb on + strand, within SM_b20432 at 446.959 kb on + strand, within SM_b20432 at 446.960 kb on - strand, within SM_b20432 at 447.121 kb on + strand, within SM_b20432 at 447.121 kb on + strand, within SM_b20432 at 447.121 kb on + strand, within SM_b20432 at 447.122 kb on - strand, within SM_b20432 at 447.122 kb on - strand, within SM_b20432 at 447.269 kb on + strand at 447.270 kb on - strand at 447.270 kb on - strand at 447.531 kb on - strand, within SM_b20433 at 447.531 kb on - strand, within SM_b20433 at 447.531 kb on - strand, within SM_b20433 at 447.956 kb on - strand, within SM_b20433 at 448.085 kb on + strand, within SM_b20433 at 448.086 kb on - strand, within SM_b20433 at 448.322 kb on - strand at 448.421 kb on - strand at 448.537 kb on + strand, within SM_b20434 at 448.537 kb on + strand, within SM_b20434 at 448.537 kb on + strand, within SM_b20434 at 448.538 kb on - strand at 448.538 kb on - strand, within SM_b20434 at 448.538 kb on - strand, within SM_b20434 at 448.538 kb on - strand, within SM_b20434 at 448.538 kb on - strand, within SM_b20434 at 448.538 kb on - strand, within SM_b20434 at 448.628 kb on - strand, within SM_b20434 at 448.666 kb on + strand, within SM_b20434 at 448.666 kb on + strand, within SM_b20434 at 448.699 kb on + strand, within SM_b20434 at 448.699 kb on + strand, within SM_b20434 at 448.700 kb on - strand, within SM_b20434 at 448.700 kb on - strand, within SM_b20434 at 448.765 kb on + strand, within SM_b20434 at 448.765 kb on + strand, within SM_b20434 at 448.765 kb on + strand, within SM_b20434 at 448.765 kb on + strand, within SM_b20434 at 448.766 kb on - strand, within SM_b20434 at 448.766 kb on - strand, within SM_b20434 at 448.766 kb on - strand, within SM_b20434 at 448.808 kb on + strand, within SM_b20434 at 448.885 kb on + strand, within SM_b20434 at 448.985 kb on - strand, within SM_b20434 at 448.995 kb on + strand, within SM_b20434 at 449.143 kb on + strand, within SM_b20434 at 449.144 kb on - strand, within SM_b20434 at 449.235 kb on + strand, within SM_b20434 at 449.317 kb on + strand, within SM_b20434 at 449.318 kb on - strand, within SM_b20434
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 446,417 - +1.7 446,417 - +0.2 446,420 + +0.6 446,480 - SM_b20432 0.13 -0.2 446,508 - SM_b20432 0.16 -1.0 446,645 + SM_b20432 0.29 -0.1 446,884 + SM_b20432 0.53 -0.0 446,959 + SM_b20432 0.61 -0.6 446,959 + SM_b20432 0.61 -2.1 446,959 + SM_b20432 0.61 -0.1 446,959 + SM_b20432 0.61 -0.3 446,960 - SM_b20432 0.61 +0.8 447,121 + SM_b20432 0.77 -1.3 447,121 + SM_b20432 0.77 +0.1 447,121 + SM_b20432 0.77 -0.5 447,122 - SM_b20432 0.77 -2.9 447,122 - SM_b20432 0.77 -0.2 447,269 + +0.1 447,270 - -0.6 447,270 - +1.3 447,531 - SM_b20433 0.18 +1.2 447,531 - SM_b20433 0.18 +0.9 447,531 - SM_b20433 0.18 +1.4 447,956 - SM_b20433 0.61 +0.4 448,085 + SM_b20433 0.74 -0.6 448,086 - SM_b20433 0.74 +0.2 448,322 - +0.5 448,421 - -1.9 448,537 + SM_b20434 0.13 -1.7 448,537 + SM_b20434 0.13 -2.0 448,537 + SM_b20434 0.13 -0.7 448,538 - +1.1 448,538 - SM_b20434 0.13 -1.5 448,538 - SM_b20434 0.13 -2.2 448,538 - SM_b20434 0.13 -0.2 448,538 - SM_b20434 0.13 +0.5 448,538 - SM_b20434 0.13 +0.9 448,628 - SM_b20434 0.21 -2.1 448,666 + SM_b20434 0.24 -0.1 448,666 + SM_b20434 0.24 +0.4 448,699 + SM_b20434 0.27 -0.5 448,699 + SM_b20434 0.27 +0.5 448,700 - SM_b20434 0.27 -1.6 448,700 - SM_b20434 0.27 -1.2 448,765 + SM_b20434 0.32 +0.6 448,765 + SM_b20434 0.32 -0.0 448,765 + SM_b20434 0.32 -1.0 448,765 + SM_b20434 0.32 +0.3 448,766 - SM_b20434 0.32 -1.7 448,766 - SM_b20434 0.32 +0.3 448,766 - SM_b20434 0.32 +0.8 448,808 + SM_b20434 0.36 -0.8 448,885 + SM_b20434 0.42 +0.6 448,985 - SM_b20434 0.51 -0.1 448,995 + SM_b20434 0.52 +0.5 449,143 + SM_b20434 0.64 +2.4 449,144 - SM_b20434 0.64 -0.5 449,235 + SM_b20434 0.72 -0.2 449,317 + SM_b20434 0.79 -0.9 449,318 - SM_b20434 0.79 +1.0
Or see this region's nucleotide sequence