Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20415 and SM_b20416 are separated by 368 nucleotides SM_b20416 and SM_b20417 are separated by 117 nucleotides
SM_b20415: SM_b20415 - oxidoreductase, at 428,015 to 429,304
_b20415
SM_b20416: SM_b20416 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 429,673 to 430,965
_b20416
SM_b20417: SM_b20417 - glycerol-3-phosphate ABC transporter permease, at 431,083 to 431,964
_b20417
Position (kb) 429
430
431 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 429.055 kb on + strand, within SM_b20415 at 429.056 kb on - strand, within SM_b20415 at 429.095 kb on + strand, within SM_b20415 at 429.095 kb on + strand, within SM_b20415 at 429.164 kb on + strand, within SM_b20415 at 429.165 kb on - strand, within SM_b20415 at 429.165 kb on - strand, within SM_b20415 at 429.293 kb on + strand at 429.441 kb on + strand at 429.441 kb on + strand at 429.441 kb on + strand at 429.442 kb on - strand at 429.442 kb on - strand at 429.442 kb on - strand at 429.442 kb on - strand at 429.481 kb on + strand at 429.526 kb on + strand at 429.526 kb on + strand at 429.527 kb on - strand at 429.655 kb on - strand at 429.669 kb on + strand at 429.669 kb on + strand at 429.774 kb on + strand at 429.827 kb on - strand, within SM_b20416 at 429.857 kb on - strand, within SM_b20416 at 429.857 kb on - strand, within SM_b20416 at 430.025 kb on - strand, within SM_b20416 at 430.045 kb on + strand, within SM_b20416 at 430.049 kb on - strand, within SM_b20416 at 430.049 kb on - strand, within SM_b20416 at 430.083 kb on + strand, within SM_b20416 at 430.085 kb on - strand, within SM_b20416 at 430.291 kb on + strand, within SM_b20416 at 430.292 kb on - strand, within SM_b20416 at 430.355 kb on - strand, within SM_b20416 at 430.420 kb on - strand, within SM_b20416 at 430.537 kb on + strand, within SM_b20416 at 430.540 kb on + strand, within SM_b20416 at 430.540 kb on + strand, within SM_b20416 at 430.540 kb on + strand, within SM_b20416 at 430.618 kb on + strand, within SM_b20416 at 430.618 kb on + strand, within SM_b20416 at 430.618 kb on + strand, within SM_b20416 at 430.618 kb on - strand, within SM_b20416 at 430.619 kb on - strand, within SM_b20416 at 430.695 kb on + strand, within SM_b20416 at 430.695 kb on + strand, within SM_b20416 at 430.695 kb on + strand, within SM_b20416 at 430.695 kb on + strand, within SM_b20416 at 430.696 kb on - strand, within SM_b20416 at 430.696 kb on - strand, within SM_b20416 at 430.718 kb on - strand, within SM_b20416 at 430.718 kb on - strand, within SM_b20416 at 430.745 kb on - strand, within SM_b20416 at 430.745 kb on - strand, within SM_b20416 at 430.845 kb on + strand at 431.119 kb on + strand at 431.120 kb on - strand at 431.120 kb on - strand at 431.189 kb on - strand, within SM_b20417 at 431.420 kb on - strand, within SM_b20417 at 431.420 kb on - strand, within SM_b20417 at 431.492 kb on - strand, within SM_b20417 at 431.492 kb on - strand, within SM_b20417 at 431.492 kb on - strand, within SM_b20417 at 431.493 kb on + strand, within SM_b20417 at 431.493 kb on + strand, within SM_b20417 at 431.749 kb on + strand, within SM_b20417 at 431.750 kb on - strand, within SM_b20417 at 431.750 kb on - strand, within SM_b20417 at 431.764 kb on - strand, within SM_b20417 at 431.828 kb on - strand, within SM_b20417 at 431.828 kb on - strand, within SM_b20417 at 431.836 kb on + strand, within SM_b20417 at 431.836 kb on + strand, within SM_b20417 at 431.836 kb on + strand, within SM_b20417 at 431.837 kb on - strand, within SM_b20417 at 431.837 kb on - strand, within SM_b20417 at 431.838 kb on + strand, within SM_b20417 at 431.838 kb on + strand, within SM_b20417 at 431.957 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 429,055 + SM_b20415 0.81 -0.9 429,056 - SM_b20415 0.81 +0.1 429,095 + SM_b20415 0.84 +0.3 429,095 + SM_b20415 0.84 +0.7 429,164 + SM_b20415 0.89 +0.2 429,165 - SM_b20415 0.89 +0.5 429,165 - SM_b20415 0.89 +0.3 429,293 + -0.5 429,441 + -1.1 429,441 + +1.1 429,441 + +1.2 429,442 - -0.0 429,442 - +0.7 429,442 - +1.2 429,442 - -0.6 429,481 + +3.3 429,526 + +0.1 429,526 + -0.5 429,527 - -0.3 429,655 - -1.3 429,669 + +0.1 429,669 + -0.3 429,774 + +1.8 429,827 - SM_b20416 0.12 +0.3 429,857 - SM_b20416 0.14 -0.3 429,857 - SM_b20416 0.14 +0.6 430,025 - SM_b20416 0.27 -1.4 430,045 + SM_b20416 0.29 +0.4 430,049 - SM_b20416 0.29 +0.2 430,049 - SM_b20416 0.29 -0.4 430,083 + SM_b20416 0.32 +0.8 430,085 - SM_b20416 0.32 +0.5 430,291 + SM_b20416 0.48 -0.7 430,292 - SM_b20416 0.48 +1.3 430,355 - SM_b20416 0.53 +1.7 430,420 - SM_b20416 0.58 -0.5 430,537 + SM_b20416 0.67 -2.2 430,540 + SM_b20416 0.67 +1.7 430,540 + SM_b20416 0.67 -0.7 430,540 + SM_b20416 0.67 +0.3 430,618 + SM_b20416 0.73 -0.4 430,618 + SM_b20416 0.73 -1.2 430,618 + SM_b20416 0.73 +2.8 430,618 - SM_b20416 0.73 +1.0 430,619 - SM_b20416 0.73 +0.4 430,695 + SM_b20416 0.79 -0.9 430,695 + SM_b20416 0.79 -0.6 430,695 + SM_b20416 0.79 +0.5 430,695 + SM_b20416 0.79 +1.1 430,696 - SM_b20416 0.79 +1.2 430,696 - SM_b20416 0.79 +0.2 430,718 - SM_b20416 0.81 +1.3 430,718 - SM_b20416 0.81 +0.2 430,745 - SM_b20416 0.83 +0.5 430,745 - SM_b20416 0.83 +0.2 430,845 + -0.4 431,119 + +0.4 431,120 - -2.4 431,120 - -0.3 431,189 - SM_b20417 0.12 +0.3 431,420 - SM_b20417 0.38 -0.2 431,420 - SM_b20417 0.38 +1.5 431,492 - SM_b20417 0.46 +0.4 431,492 - SM_b20417 0.46 +0.3 431,492 - SM_b20417 0.46 -0.3 431,493 + SM_b20417 0.46 +0.0 431,493 + SM_b20417 0.46 -0.3 431,749 + SM_b20417 0.76 +0.4 431,750 - SM_b20417 0.76 +0.4 431,750 - SM_b20417 0.76 -0.3 431,764 - SM_b20417 0.77 +0.3 431,828 - SM_b20417 0.84 +0.1 431,828 - SM_b20417 0.84 -0.0 431,836 + SM_b20417 0.85 +0.2 431,836 + SM_b20417 0.85 -0.5 431,836 + SM_b20417 0.85 +0.1 431,837 - SM_b20417 0.85 -1.2 431,837 - SM_b20417 0.85 +0.4 431,838 + SM_b20417 0.86 -0.5 431,838 + SM_b20417 0.86 -0.6 431,957 - +1.7
Or see this region's nucleotide sequence