Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20284 and SM_b20285 are separated by 79 nucleotides SM_b20285 and SM_b20286 are separated by 202 nucleotides
SM_b20284: SM_b20284 - spermidine/putrescine ABC transporter substrate-binding protein, at 288,561 to 289,661
_b20284
SM_b20285: SM_b20285 - transcriptional regulator, at 289,741 to 290,718
_b20285
SM_b20286: SM_b20286 - hypothetical protein, at 290,921 to 292,000
_b20286
Position (kb) 289
290
291 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 288.776 kb on + strand, within SM_b20284 at 288.791 kb on + strand, within SM_b20284 at 288.791 kb on + strand, within SM_b20284 at 288.791 kb on + strand, within SM_b20284 at 288.792 kb on - strand, within SM_b20284 at 288.793 kb on + strand, within SM_b20284 at 288.794 kb on - strand, within SM_b20284 at 288.839 kb on - strand, within SM_b20284 at 288.839 kb on - strand, within SM_b20284 at 288.851 kb on - strand, within SM_b20284 at 288.851 kb on - strand, within SM_b20284 at 288.851 kb on - strand, within SM_b20284 at 288.874 kb on - strand, within SM_b20284 at 288.874 kb on - strand, within SM_b20284 at 288.926 kb on + strand, within SM_b20284 at 288.937 kb on + strand, within SM_b20284 at 288.937 kb on + strand, within SM_b20284 at 288.938 kb on - strand, within SM_b20284 at 288.938 kb on - strand, within SM_b20284 at 288.938 kb on - strand, within SM_b20284 at 288.938 kb on - strand, within SM_b20284 at 288.986 kb on - strand, within SM_b20284 at 288.986 kb on - strand, within SM_b20284 at 288.988 kb on + strand, within SM_b20284 at 288.989 kb on - strand, within SM_b20284 at 289.022 kb on - strand, within SM_b20284 at 289.022 kb on - strand, within SM_b20284 at 289.072 kb on + strand, within SM_b20284 at 289.073 kb on - strand, within SM_b20284 at 289.138 kb on + strand, within SM_b20284 at 289.139 kb on - strand, within SM_b20284 at 289.139 kb on - strand, within SM_b20284 at 289.139 kb on - strand, within SM_b20284 at 289.156 kb on + strand, within SM_b20284 at 289.156 kb on + strand, within SM_b20284 at 289.156 kb on + strand, within SM_b20284 at 289.156 kb on + strand, within SM_b20284 at 289.199 kb on + strand, within SM_b20284 at 289.199 kb on + strand, within SM_b20284 at 289.200 kb on - strand, within SM_b20284 at 289.201 kb on + strand, within SM_b20284 at 289.252 kb on + strand, within SM_b20284 at 289.291 kb on + strand, within SM_b20284 at 289.292 kb on - strand, within SM_b20284 at 289.439 kb on - strand, within SM_b20284 at 289.487 kb on + strand, within SM_b20284 at 289.509 kb on - strand, within SM_b20284 at 289.534 kb on + strand, within SM_b20284 at 289.534 kb on + strand, within SM_b20284 at 289.534 kb on + strand, within SM_b20284 at 289.534 kb on + strand, within SM_b20284 at 289.683 kb on + strand at 289.707 kb on + strand at 289.815 kb on + strand at 289.973 kb on + strand, within SM_b20285 at 289.974 kb on - strand, within SM_b20285 at 289.974 kb on - strand, within SM_b20285 at 289.974 kb on - strand, within SM_b20285 at 289.974 kb on - strand, within SM_b20285 at 289.974 kb on - strand, within SM_b20285 at 290.092 kb on + strand, within SM_b20285 at 290.092 kb on + strand, within SM_b20285 at 290.422 kb on + strand, within SM_b20285 at 290.701 kb on + strand at 290.735 kb on - strand at 290.896 kb on + strand at 290.896 kb on + strand at 290.896 kb on + strand at 290.926 kb on + strand at 290.926 kb on + strand at 290.926 kb on + strand at 290.927 kb on - strand at 290.932 kb on + strand at 290.932 kb on + strand at 291.252 kb on - strand, within SM_b20286 at 291.684 kb on + strand, within SM_b20286
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 288,776 + SM_b20284 0.20 +0.7 288,791 + SM_b20284 0.21 +1.6 288,791 + SM_b20284 0.21 +0.9 288,791 + SM_b20284 0.21 +1.1 288,792 - SM_b20284 0.21 +0.1 288,793 + SM_b20284 0.21 +0.1 288,794 - SM_b20284 0.21 -0.8 288,839 - SM_b20284 0.25 +0.5 288,839 - SM_b20284 0.25 -0.9 288,851 - SM_b20284 0.26 -2.0 288,851 - SM_b20284 0.26 +1.2 288,851 - SM_b20284 0.26 -0.7 288,874 - SM_b20284 0.28 +0.1 288,874 - SM_b20284 0.28 -0.7 288,926 + SM_b20284 0.33 -1.9 288,937 + SM_b20284 0.34 -0.7 288,937 + SM_b20284 0.34 +0.3 288,938 - SM_b20284 0.34 -2.6 288,938 - SM_b20284 0.34 -0.2 288,938 - SM_b20284 0.34 +0.5 288,938 - SM_b20284 0.34 +1.3 288,986 - SM_b20284 0.39 +0.6 288,986 - SM_b20284 0.39 -1.2 288,988 + SM_b20284 0.39 +2.7 288,989 - SM_b20284 0.39 +0.1 289,022 - SM_b20284 0.42 -0.8 289,022 - SM_b20284 0.42 -0.3 289,072 + SM_b20284 0.46 +3.9 289,073 - SM_b20284 0.47 -0.5 289,138 + SM_b20284 0.52 +0.1 289,139 - SM_b20284 0.52 +0.3 289,139 - SM_b20284 0.52 -1.6 289,139 - SM_b20284 0.52 +0.4 289,156 + SM_b20284 0.54 -1.3 289,156 + SM_b20284 0.54 +0.3 289,156 + SM_b20284 0.54 +0.1 289,156 + SM_b20284 0.54 -1.6 289,199 + SM_b20284 0.58 -0.5 289,199 + SM_b20284 0.58 +0.3 289,200 - SM_b20284 0.58 +1.1 289,201 + SM_b20284 0.58 -1.0 289,252 + SM_b20284 0.63 -0.7 289,291 + SM_b20284 0.66 -1.3 289,292 - SM_b20284 0.66 -0.3 289,439 - SM_b20284 0.80 -0.2 289,487 + SM_b20284 0.84 -0.4 289,509 - SM_b20284 0.86 +0.1 289,534 + SM_b20284 0.88 -1.0 289,534 + SM_b20284 0.88 +0.6 289,534 + SM_b20284 0.88 +0.1 289,534 + SM_b20284 0.88 -2.7 289,683 + +0.0 289,707 + -0.2 289,815 + -0.8 289,973 + SM_b20285 0.24 +1.2 289,974 - SM_b20285 0.24 +1.3 289,974 - SM_b20285 0.24 +0.8 289,974 - SM_b20285 0.24 +1.4 289,974 - SM_b20285 0.24 +0.2 289,974 - SM_b20285 0.24 -0.4 290,092 + SM_b20285 0.36 -0.3 290,092 + SM_b20285 0.36 +0.1 290,422 + SM_b20285 0.70 -0.6 290,701 + +1.5 290,735 - -0.7 290,896 + -1.2 290,896 + -0.8 290,896 + +1.4 290,926 + -0.6 290,926 + -0.6 290,926 + +0.5 290,927 - +0.6 290,932 + -2.3 290,932 + -0.1 291,252 - SM_b20286 0.31 +1.3 291,684 + SM_b20286 0.71 +0.3
Or see this region's nucleotide sequence