Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20261 and SM_b20262 are separated by 242 nucleotides SM_b20262 and SM_b20263 are separated by 186 nucleotides
SM_b20261: SM_b20261 - malate dehydrogenase, at 265,534 to 266,571
_b20261
SM_b20262: SM_b20262 - semialdehyde dehydrogenase, at 266,814 to 268,331
_b20262
SM_b20263: SM_b20263 - amino acid ABC transporter substrate-binding protein, at 268,518 to 269,324
_b20263
Position (kb) 266
267
268
269 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 266.045 kb on + strand, within SM_b20261 at 266.046 kb on - strand, within SM_b20261 at 266.327 kb on - strand, within SM_b20261 at 266.589 kb on - strand at 266.589 kb on - strand at 266.636 kb on + strand at 266.637 kb on - strand at 266.678 kb on - strand at 266.679 kb on + strand at 266.679 kb on + strand at 266.680 kb on - strand at 266.707 kb on + strand at 266.758 kb on + strand at 266.929 kb on + strand at 266.929 kb on + strand at 266.929 kb on + strand at 266.930 kb on - strand at 266.979 kb on + strand, within SM_b20262 at 266.980 kb on - strand, within SM_b20262 at 266.980 kb on - strand, within SM_b20262 at 266.980 kb on - strand, within SM_b20262 at 266.986 kb on - strand, within SM_b20262 at 267.156 kb on - strand, within SM_b20262 at 267.171 kb on + strand, within SM_b20262 at 267.172 kb on - strand, within SM_b20262 at 267.232 kb on + strand, within SM_b20262 at 267.233 kb on - strand, within SM_b20262 at 267.355 kb on + strand, within SM_b20262 at 267.356 kb on - strand, within SM_b20262 at 267.445 kb on + strand, within SM_b20262 at 267.506 kb on + strand, within SM_b20262 at 268.079 kb on + strand, within SM_b20262 at 268.439 kb on + strand at 268.439 kb on + strand at 268.468 kb on + strand at 268.469 kb on - strand at 268.698 kb on + strand, within SM_b20263 at 268.860 kb on + strand, within SM_b20263 at 268.861 kb on - strand, within SM_b20263 at 268.959 kb on + strand, within SM_b20263 at 268.959 kb on + strand, within SM_b20263 at 268.959 kb on + strand, within SM_b20263 at 268.959 kb on + strand, within SM_b20263 at 268.960 kb on - strand, within SM_b20263 at 269.019 kb on + strand, within SM_b20263 at 269.081 kb on + strand at 269.196 kb on + strand, within SM_b20263
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 266,045 + SM_b20261 0.49 +2.8 266,046 - SM_b20261 0.49 -1.6 266,327 - SM_b20261 0.76 -2.2 266,589 - -1.3 266,589 - -1.3 266,636 + +1.4 266,637 - +0.0 266,678 - -1.2 266,679 + +0.2 266,679 + -1.8 266,680 - +0.3 266,707 + +1.1 266,758 + -1.4 266,929 + +0.5 266,929 + -0.7 266,929 + +0.1 266,930 - -0.1 266,979 + SM_b20262 0.11 +0.1 266,980 - SM_b20262 0.11 +1.1 266,980 - SM_b20262 0.11 +0.5 266,980 - SM_b20262 0.11 +1.5 266,986 - SM_b20262 0.11 -1.0 267,156 - SM_b20262 0.23 +0.5 267,171 + SM_b20262 0.24 +0.0 267,172 - SM_b20262 0.24 +1.6 267,232 + SM_b20262 0.28 +0.7 267,233 - SM_b20262 0.28 -0.4 267,355 + SM_b20262 0.36 +0.8 267,356 - SM_b20262 0.36 -0.1 267,445 + SM_b20262 0.42 -0.1 267,506 + SM_b20262 0.46 -0.9 268,079 + SM_b20262 0.83 +0.9 268,439 + -0.6 268,439 + +0.0 268,468 + -0.6 268,469 - -0.0 268,698 + SM_b20263 0.22 +0.6 268,860 + SM_b20263 0.42 -0.1 268,861 - SM_b20263 0.43 +1.4 268,959 + SM_b20263 0.55 -2.3 268,959 + SM_b20263 0.55 +0.2 268,959 + SM_b20263 0.55 -0.3 268,959 + SM_b20263 0.55 +0.2 268,960 - SM_b20263 0.55 -0.6 269,019 + SM_b20263 0.62 +1.3 269,081 + -0.4 269,196 + SM_b20263 0.84 +0.4
Or see this region's nucleotide sequence