Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20259 and SM_b20260 are separated by 47 nucleotides SM_b20260 and SM_b20261 are separated by 63 nucleotides SM_b20261 and SM_b20262 are separated by 242 nucleotides
SM_b20259: SM_b20259 - dihydrodipicolinate synthase, at 264,068 to 265,030
_b20259
SM_b20260: SM_b20260 - hypothetical protein, at 265,078 to 265,470
_b20260
SM_b20261: SM_b20261 - malate dehydrogenase, at 265,534 to 266,571
_b20261
SM_b20262: SM_b20262 - semialdehyde dehydrogenase, at 266,814 to 268,331
_b20262
Position (kb) 265
266
267 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 264.711 kb on + strand, within SM_b20259 at 264.854 kb on + strand, within SM_b20259 at 264.980 kb on + strand at 264.980 kb on + strand at 265.020 kb on - strand at 265.142 kb on - strand, within SM_b20260 at 265.290 kb on - strand, within SM_b20260 at 265.340 kb on + strand, within SM_b20260 at 265.341 kb on - strand, within SM_b20260 at 265.341 kb on - strand, within SM_b20260 at 265.799 kb on + strand, within SM_b20261 at 265.800 kb on - strand, within SM_b20261 at 265.800 kb on - strand, within SM_b20261 at 265.800 kb on - strand, within SM_b20261 at 266.045 kb on + strand, within SM_b20261 at 266.046 kb on - strand, within SM_b20261 at 266.327 kb on - strand, within SM_b20261 at 266.589 kb on - strand at 266.589 kb on - strand at 266.636 kb on + strand at 266.637 kb on - strand at 266.678 kb on - strand at 266.679 kb on + strand at 266.679 kb on + strand at 266.680 kb on - strand at 266.707 kb on + strand at 266.758 kb on + strand at 266.929 kb on + strand at 266.929 kb on + strand at 266.929 kb on + strand at 266.930 kb on - strand at 266.979 kb on + strand, within SM_b20262 at 266.980 kb on - strand, within SM_b20262 at 266.980 kb on - strand, within SM_b20262 at 266.980 kb on - strand, within SM_b20262 at 266.986 kb on - strand, within SM_b20262 at 267.156 kb on - strand, within SM_b20262 at 267.171 kb on + strand, within SM_b20262 at 267.172 kb on - strand, within SM_b20262 at 267.232 kb on + strand, within SM_b20262 at 267.233 kb on - strand, within SM_b20262 at 267.355 kb on + strand, within SM_b20262 at 267.356 kb on - strand, within SM_b20262 at 267.445 kb on + strand, within SM_b20262 at 267.506 kb on + strand, within SM_b20262
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 264,711 + SM_b20259 0.67 +0.7 264,854 + SM_b20259 0.82 -0.5 264,980 + -0.7 264,980 + -0.6 265,020 - +0.9 265,142 - SM_b20260 0.16 +0.5 265,290 - SM_b20260 0.54 -0.8 265,340 + SM_b20260 0.67 +0.3 265,341 - SM_b20260 0.67 -1.2 265,341 - SM_b20260 0.67 -1.5 265,799 + SM_b20261 0.26 +0.3 265,800 - SM_b20261 0.26 +1.8 265,800 - SM_b20261 0.26 -2.0 265,800 - SM_b20261 0.26 +0.7 266,045 + SM_b20261 0.49 +2.8 266,046 - SM_b20261 0.49 -1.6 266,327 - SM_b20261 0.76 -2.2 266,589 - -1.3 266,589 - -1.3 266,636 + +1.4 266,637 - +0.0 266,678 - -1.2 266,679 + +0.2 266,679 + -1.8 266,680 - +0.3 266,707 + +1.1 266,758 + -1.4 266,929 + +0.5 266,929 + -0.7 266,929 + +0.1 266,930 - -0.1 266,979 + SM_b20262 0.11 +0.1 266,980 - SM_b20262 0.11 +1.1 266,980 - SM_b20262 0.11 +0.5 266,980 - SM_b20262 0.11 +1.5 266,986 - SM_b20262 0.11 -1.0 267,156 - SM_b20262 0.23 +0.5 267,171 + SM_b20262 0.24 +0.0 267,172 - SM_b20262 0.24 +1.6 267,232 + SM_b20262 0.28 +0.7 267,233 - SM_b20262 0.28 -0.4 267,355 + SM_b20262 0.36 +0.8 267,356 - SM_b20262 0.36 -0.1 267,445 + SM_b20262 0.42 -0.1 267,506 + SM_b20262 0.46 -0.9
Or see this region's nucleotide sequence