Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20253 and SM_b20254 are separated by 208 nucleotides SM_b20254 and SM_b20255 are separated by 74 nucleotides SM_b20255 and SM_b20256 are separated by 131 nucleotides SM_b20256 and SM_b20257 are separated by 182 nucleotides
SM_b20253: SM_b20253 - hypothetical protein, at 259,295 to 260,200
_b20253
SM_b20254: SM_b20254 - hypothetical protein, at 260,409 to 260,684
_b20254
SM_b20255: SM_b20255 - hypothetical protein, at 260,759 to 261,310
_b20255
SM_b20256: SM_b20256 - hypothetical protein, at 261,442 to 261,891
_b20256
SM_b20257: SM_b20257 - adenylate cyclase, at 262,074 to 263,132
_b20257
Position (kb) 260
261
262 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 259.899 kb on + strand, within SM_b20253 at 259.900 kb on - strand, within SM_b20253 at 259.900 kb on - strand, within SM_b20253 at 259.948 kb on - strand, within SM_b20253 at 260.053 kb on + strand, within SM_b20253 at 260.152 kb on - strand at 260.200 kb on + strand at 260.316 kb on + strand at 260.317 kb on - strand at 260.367 kb on + strand at 260.368 kb on - strand at 260.760 kb on + strand at 260.760 kb on + strand at 260.760 kb on + strand at 260.879 kb on + strand, within SM_b20255 at 260.879 kb on + strand, within SM_b20255 at 260.879 kb on + strand, within SM_b20255 at 261.071 kb on + strand, within SM_b20255 at 261.071 kb on + strand, within SM_b20255 at 261.355 kb on + strand at 261.674 kb on + strand, within SM_b20256 at 261.674 kb on + strand, within SM_b20256 at 261.736 kb on + strand, within SM_b20256 at 261.749 kb on + strand, within SM_b20256 at 261.964 kb on + strand at 261.965 kb on - strand at 262.062 kb on + strand at 262.063 kb on - strand at 262.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 259,899 + SM_b20253 0.67 +0.0 259,900 - SM_b20253 0.67 +0.6 259,900 - SM_b20253 0.67 -0.4 259,948 - SM_b20253 0.72 -1.1 260,053 + SM_b20253 0.84 +1.9 260,152 - -0.5 260,200 + -1.2 260,316 + -0.4 260,317 - -0.8 260,367 + +1.6 260,368 - +0.3 260,760 + +0.3 260,760 + -3.2 260,760 + +0.5 260,879 + SM_b20255 0.22 -0.1 260,879 + SM_b20255 0.22 +0.6 260,879 + SM_b20255 0.22 -0.1 261,071 + SM_b20255 0.57 +1.6 261,071 + SM_b20255 0.57 -1.0 261,355 + -2.3 261,674 + SM_b20256 0.52 +1.1 261,674 + SM_b20256 0.52 -0.2 261,736 + SM_b20256 0.65 +0.2 261,749 + SM_b20256 0.68 -0.1 261,964 + +2.1 261,965 - -2.6 262,062 + -0.4 262,063 - +0.5 262,063 - -1.1
Or see this region's nucleotide sequence