Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20199 and SM_b20200 are separated by 2 nucleotides SM_b20200 and SM_b20201 are separated by 10 nucleotides SM_b20201 and SM_b20202 are separated by 10 nucleotides
SM_b20199: SM_b20199 - fructose-1,6-bisphosphate aldolase, at 207,260 to 208,339
_b20199
SM_b20200: SM_b20200 - transketolase, at 208,342 to 210,426
_b20200
SM_b20201: SM_b20201 - phosphoribulokinase, at 210,437 to 211,306
_b20201
SM_b20202: SM_b20202 - fructose-1,6-bisphosphatase, at 211,317 to 212,366
_b20202
Position (kb) 208
209
210
211 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 207.548 kb on + strand, within SM_b20199 at 207.549 kb on - strand, within SM_b20199 at 207.549 kb on - strand, within SM_b20199 at 207.549 kb on - strand, within SM_b20199 at 207.731 kb on - strand, within SM_b20199 at 207.739 kb on - strand, within SM_b20199 at 207.957 kb on - strand, within SM_b20199 at 207.979 kb on + strand, within SM_b20199 at 207.979 kb on + strand, within SM_b20199 at 207.981 kb on + strand, within SM_b20199 at 207.982 kb on - strand, within SM_b20199 at 208.122 kb on + strand, within SM_b20199 at 208.287 kb on + strand at 208.400 kb on - strand at 208.621 kb on - strand, within SM_b20200 at 208.793 kb on + strand, within SM_b20200 at 208.793 kb on + strand, within SM_b20200 at 208.793 kb on + strand, within SM_b20200 at 208.794 kb on - strand, within SM_b20200 at 208.794 kb on - strand, within SM_b20200 at 208.794 kb on - strand, within SM_b20200 at 208.811 kb on - strand, within SM_b20200 at 208.811 kb on - strand, within SM_b20200 at 208.811 kb on - strand, within SM_b20200 at 208.811 kb on - strand, within SM_b20200 at 209.045 kb on + strand, within SM_b20200 at 209.045 kb on + strand, within SM_b20200 at 209.096 kb on + strand, within SM_b20200 at 209.097 kb on - strand, within SM_b20200 at 209.195 kb on + strand, within SM_b20200 at 209.204 kb on + strand, within SM_b20200 at 209.205 kb on - strand, within SM_b20200 at 209.205 kb on - strand, within SM_b20200 at 209.952 kb on - strand, within SM_b20200 at 210.083 kb on + strand, within SM_b20200 at 210.148 kb on - strand, within SM_b20200 at 210.179 kb on + strand, within SM_b20200 at 210.552 kb on + strand, within SM_b20201 at 210.552 kb on + strand, within SM_b20201 at 210.553 kb on - strand, within SM_b20201 at 210.553 kb on - strand at 210.553 kb on - strand, within SM_b20201 at 210.553 kb on - strand, within SM_b20201 at 210.553 kb on - strand, within SM_b20201 at 210.553 kb on - strand, within SM_b20201 at 210.658 kb on + strand, within SM_b20201 at 210.730 kb on + strand, within SM_b20201 at 210.730 kb on + strand, within SM_b20201 at 210.730 kb on + strand, within SM_b20201 at 210.731 kb on - strand, within SM_b20201 at 210.731 kb on - strand, within SM_b20201 at 210.732 kb on + strand, within SM_b20201 at 210.732 kb on + strand, within SM_b20201 at 210.732 kb on + strand, within SM_b20201 at 210.733 kb on - strand, within SM_b20201 at 210.839 kb on + strand, within SM_b20201 at 211.017 kb on + strand, within SM_b20201 at 211.018 kb on - strand, within SM_b20201 at 211.223 kb on + strand at 211.307 kb on - strand at 211.307 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 207,548 + SM_b20199 0.27 +0.0 207,549 - SM_b20199 0.27 +1.0 207,549 - SM_b20199 0.27 +1.1 207,549 - SM_b20199 0.27 -0.2 207,731 - SM_b20199 0.44 +0.1 207,739 - SM_b20199 0.44 -0.3 207,957 - SM_b20199 0.65 -0.6 207,979 + SM_b20199 0.67 -0.4 207,979 + SM_b20199 0.67 +0.3 207,981 + SM_b20199 0.67 -0.4 207,982 - SM_b20199 0.67 +1.4 208,122 + SM_b20199 0.80 +0.8 208,287 + +0.2 208,400 - +0.1 208,621 - SM_b20200 0.13 +0.1 208,793 + SM_b20200 0.22 -0.7 208,793 + SM_b20200 0.22 +0.8 208,793 + SM_b20200 0.22 +2.0 208,794 - SM_b20200 0.22 +0.4 208,794 - SM_b20200 0.22 +2.2 208,794 - SM_b20200 0.22 +0.9 208,811 - SM_b20200 0.22 +0.8 208,811 - SM_b20200 0.22 +0.1 208,811 - SM_b20200 0.22 +0.2 208,811 - SM_b20200 0.22 -0.6 209,045 + SM_b20200 0.34 +0.4 209,045 + SM_b20200 0.34 -0.8 209,096 + SM_b20200 0.36 +2.8 209,097 - SM_b20200 0.36 -0.5 209,195 + SM_b20200 0.41 -0.4 209,204 + SM_b20200 0.41 -1.2 209,205 - SM_b20200 0.41 +0.9 209,205 - SM_b20200 0.41 +0.3 209,952 - SM_b20200 0.77 +1.8 210,083 + SM_b20200 0.84 -2.4 210,148 - SM_b20200 0.87 -0.1 210,179 + SM_b20200 0.88 +0.8 210,552 + SM_b20201 0.13 -0.7 210,552 + SM_b20201 0.13 -1.0 210,553 - SM_b20201 0.13 +0.2 210,553 - -1.6 210,553 - SM_b20201 0.13 -0.0 210,553 - SM_b20201 0.13 -1.2 210,553 - SM_b20201 0.13 -1.2 210,553 - SM_b20201 0.13 -0.2 210,658 + SM_b20201 0.25 -0.3 210,730 + SM_b20201 0.34 +0.9 210,730 + SM_b20201 0.34 -0.2 210,730 + SM_b20201 0.34 +0.0 210,731 - SM_b20201 0.34 -2.1 210,731 - SM_b20201 0.34 -0.0 210,732 + SM_b20201 0.34 -0.2 210,732 + SM_b20201 0.34 -0.0 210,732 + SM_b20201 0.34 +0.5 210,733 - SM_b20201 0.34 -0.7 210,839 + SM_b20201 0.46 +0.9 211,017 + SM_b20201 0.67 -3.2 211,018 - SM_b20201 0.67 +0.3 211,223 + -0.3 211,307 - -0.0 211,307 - -0.6
Or see this region's nucleotide sequence