Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20181 and SM_b20182 overlap by 26 nucleotides SM_b20182 and SM_b20183 overlap by 4 nucleotides SM_b20183 and SM_b20184 overlap by 4 nucleotides SM_b20184 and SM_b20185 overlap by 4 nucleotides
SM_b20181: SM_b20181 - ABC transporter substrate-binding protein, at 198,276 to 199,247
_b20181
SM_b20182: SM_b20182 - ABC transporter, at 199,222 to 200,001
_b20182
SM_b20183: SM_b20183 - ABC transporter ATP-binding protein, at 199,998 to 200,621
_b20183
SM_b20184: SM_b20184 - ABC transporter ATP-binding protein, at 200,618 to 201,346
_b20184
SM_b20185: SM_b20185 - hypothetical protein, at 201,343 to 202,134
_b20185
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 199.245 kb on + strand at 199.272 kb on - strand at 199.409 kb on - strand, within SM_b20182 at 199.532 kb on + strand, within SM_b20182 at 199.579 kb on + strand, within SM_b20182 at 199.579 kb on + strand, within SM_b20182 at 199.580 kb on - strand, within SM_b20182 at 199.580 kb on - strand, within SM_b20182 at 199.580 kb on - strand, within SM_b20182 at 199.580 kb on - strand, within SM_b20182 at 199.806 kb on - strand, within SM_b20182 at 199.873 kb on + strand, within SM_b20182 at 199.910 kb on - strand, within SM_b20182 at 199.910 kb on - strand, within SM_b20182 at 200.421 kb on + strand, within SM_b20183 at 200.582 kb on + strand at 200.584 kb on + strand at 200.585 kb on - strand at 200.585 kb on - strand at 200.585 kb on - strand at 201.081 kb on + strand, within SM_b20184 at 201.226 kb on - strand, within SM_b20184 at 201.517 kb on + strand, within SM_b20185 at 201.517 kb on + strand, within SM_b20185 at 201.517 kb on + strand, within SM_b20185 at 201.517 kb on + strand, within SM_b20185 at 201.517 kb on + strand, within SM_b20185 at 201.518 kb on - strand, within SM_b20185 at 201.518 kb on - strand, within SM_b20185 at 201.519 kb on + strand, within SM_b20185 at 201.519 kb on + strand, within SM_b20185 at 201.520 kb on - strand, within SM_b20185 at 201.520 kb on - strand, within SM_b20185 at 201.522 kb on + strand, within SM_b20185 at 201.522 kb on + strand, within SM_b20185 at 201.522 kb on + strand, within SM_b20185 at 201.522 kb on + strand, within SM_b20185 at 201.523 kb on - strand, within SM_b20185 at 201.523 kb on - strand, within SM_b20185 at 201.523 kb on - strand, within SM_b20185 at 201.523 kb on - strand, within SM_b20185 at 201.523 kb on - strand, within SM_b20185 at 201.526 kb on + strand, within SM_b20185 at 201.526 kb on + strand, within SM_b20185 at 201.526 kb on + strand, within SM_b20185 at 201.526 kb on + strand, within SM_b20185 at 201.535 kb on + strand, within SM_b20185 at 201.535 kb on + strand, within SM_b20185 at 201.536 kb on - strand at 201.537 kb on + strand, within SM_b20185
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 199,245 + -2.5 199,272 - +1.8 199,409 - SM_b20182 0.24 +0.6 199,532 + SM_b20182 0.40 +0.7 199,579 + SM_b20182 0.46 +0.0 199,579 + SM_b20182 0.46 +0.8 199,580 - SM_b20182 0.46 +0.6 199,580 - SM_b20182 0.46 +0.4 199,580 - SM_b20182 0.46 -1.3 199,580 - SM_b20182 0.46 +0.2 199,806 - SM_b20182 0.75 +0.0 199,873 + SM_b20182 0.83 -0.8 199,910 - SM_b20182 0.88 +0.7 199,910 - SM_b20182 0.88 -0.2 200,421 + SM_b20183 0.68 +0.5 200,582 + -2.7 200,584 + +0.4 200,585 - -0.3 200,585 - -1.2 200,585 - +1.4 201,081 + SM_b20184 0.64 +1.6 201,226 - SM_b20184 0.83 +0.1 201,517 + SM_b20185 0.22 -1.2 201,517 + SM_b20185 0.22 -2.2 201,517 + SM_b20185 0.22 +0.3 201,517 + SM_b20185 0.22 +0.5 201,517 + SM_b20185 0.22 +0.5 201,518 - SM_b20185 0.22 -0.5 201,518 - SM_b20185 0.22 +0.8 201,519 + SM_b20185 0.22 -1.2 201,519 + SM_b20185 0.22 -0.3 201,520 - SM_b20185 0.22 +0.5 201,520 - SM_b20185 0.22 +0.8 201,522 + SM_b20185 0.23 +0.9 201,522 + SM_b20185 0.23 -0.3 201,522 + SM_b20185 0.23 -0.9 201,522 + SM_b20185 0.23 +1.4 201,523 - SM_b20185 0.23 -0.1 201,523 - SM_b20185 0.23 +0.2 201,523 - SM_b20185 0.23 -0.2 201,523 - SM_b20185 0.23 +1.7 201,523 - SM_b20185 0.23 +0.2 201,526 + SM_b20185 0.23 +1.2 201,526 + SM_b20185 0.23 +0.4 201,526 + SM_b20185 0.23 +0.5 201,526 + SM_b20185 0.23 -0.6 201,535 + SM_b20185 0.24 -0.0 201,535 + SM_b20185 0.24 +1.3 201,536 - +2.8 201,537 + SM_b20185 0.24 +0.9
Or see this region's nucleotide sequence