Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20141 and SM_b20142 overlap by 8 nucleotides SM_b20142 and SM_b20143 are separated by 14 nucleotides
SM_b20141: SM_b20141 - oligopeptide ABC transporter ATP-binding protein, at 154,809 to 156,455
_b20141
SM_b20142: SM_b20142 - oligopeptide ABC transporter permease, at 156,448 to 157,371
_b20142
SM_b20143: SM_b20143 - oligopeptide ABC transporter permease, at 157,386 to 158,300
_b20143
Position (kb) 156
157
158 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 155.603 kb on - strand, within SM_b20141 at 155.704 kb on + strand, within SM_b20141 at 155.705 kb on - strand, within SM_b20141 at 155.726 kb on - strand, within SM_b20141 at 156.254 kb on + strand, within SM_b20141 at 156.367 kb on + strand at 156.367 kb on + strand at 156.367 kb on + strand at 156.368 kb on - strand at 156.599 kb on + strand, within SM_b20142 at 156.599 kb on + strand, within SM_b20142 at 156.599 kb on + strand, within SM_b20142 at 156.695 kb on + strand, within SM_b20142 at 156.695 kb on + strand, within SM_b20142 at 156.917 kb on + strand, within SM_b20142 at 156.917 kb on + strand, within SM_b20142 at 156.922 kb on + strand, within SM_b20142 at 156.922 kb on + strand, within SM_b20142 at 156.922 kb on + strand, within SM_b20142 at 156.923 kb on - strand, within SM_b20142 at 157.243 kb on + strand, within SM_b20142 at 157.244 kb on - strand, within SM_b20142 at 157.244 kb on - strand, within SM_b20142 at 157.244 kb on - strand, within SM_b20142 at 157.417 kb on + strand at 157.417 kb on + strand at 157.551 kb on - strand, within SM_b20143 at 158.232 kb on + strand at 158.232 kb on + strand at 158.233 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 155,603 - SM_b20141 0.48 -0.1 155,704 + SM_b20141 0.54 -1.5 155,705 - SM_b20141 0.54 +0.3 155,726 - SM_b20141 0.56 +1.6 156,254 + SM_b20141 0.88 +0.4 156,367 + +0.7 156,367 + -1.1 156,367 + +0.7 156,368 - +0.2 156,599 + SM_b20142 0.16 +1.2 156,599 + SM_b20142 0.16 -0.5 156,599 + SM_b20142 0.16 +0.3 156,695 + SM_b20142 0.27 +5.3 156,695 + SM_b20142 0.27 -0.1 156,917 + SM_b20142 0.51 -0.4 156,917 + SM_b20142 0.51 +0.3 156,922 + SM_b20142 0.51 +1.2 156,922 + SM_b20142 0.51 -1.4 156,922 + SM_b20142 0.51 +0.4 156,923 - SM_b20142 0.51 +1.4 157,243 + SM_b20142 0.86 +0.7 157,244 - SM_b20142 0.86 +0.0 157,244 - SM_b20142 0.86 +0.0 157,244 - SM_b20142 0.86 -0.1 157,417 + +0.2 157,417 + -1.0 157,551 - SM_b20143 0.18 +1.3 158,232 + -1.6 158,232 + -0.2 158,233 - -1.0
Or see this region's nucleotide sequence