Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20134 and SM_b20135 are separated by 78 nucleotides SM_b20135 and SM_b20136 are separated by 30 nucleotides SM_b20136 and SM_b20137 are separated by 141 nucleotides
SM_b20134: SM_b20134 - permease, at 147,547 to 148,938
_b20134
SM_b20135: SM_b20135 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 149,017 to 149,649
_b20135
SM_b20136: SM_b20136 - hypothetical protein, at 149,680 to 151,053
_b20136
SM_b20137: SM_b20137 - hypothetical protein, at 151,195 to 152,136
_b20137
Position (kb) 149
150
151
152 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 148.847 kb on + strand at 148.848 kb on - strand at 148.848 kb on - strand at 148.912 kb on - strand at 148.933 kb on - strand at 149.174 kb on + strand, within SM_b20135 at 149.174 kb on + strand, within SM_b20135 at 149.174 kb on + strand, within SM_b20135 at 149.302 kb on + strand, within SM_b20135 at 149.336 kb on - strand, within SM_b20135 at 149.582 kb on + strand, within SM_b20135 at 149.583 kb on - strand, within SM_b20135 at 149.583 kb on - strand, within SM_b20135 at 149.583 kb on - strand, within SM_b20135 at 149.583 kb on - strand, within SM_b20135 at 149.584 kb on + strand, within SM_b20135 at 149.672 kb on + strand at 149.681 kb on + strand at 149.681 kb on + strand at 149.682 kb on - strand at 149.682 kb on - strand at 149.961 kb on - strand, within SM_b20136 at 150.032 kb on + strand, within SM_b20136 at 150.032 kb on + strand, within SM_b20136 at 150.032 kb on + strand, within SM_b20136 at 150.033 kb on - strand, within SM_b20136 at 150.129 kb on + strand, within SM_b20136 at 150.249 kb on - strand, within SM_b20136 at 150.327 kb on - strand, within SM_b20136 at 150.361 kb on + strand, within SM_b20136 at 150.361 kb on + strand, within SM_b20136 at 150.362 kb on - strand, within SM_b20136 at 150.590 kb on + strand, within SM_b20136 at 150.634 kb on + strand, within SM_b20136 at 150.634 kb on + strand, within SM_b20136 at 150.635 kb on - strand, within SM_b20136 at 150.650 kb on + strand at 150.651 kb on - strand, within SM_b20136 at 150.785 kb on + strand, within SM_b20136 at 150.785 kb on + strand, within SM_b20136 at 150.985 kb on + strand at 150.986 kb on - strand at 150.998 kb on + strand at 150.999 kb on - strand at 151.054 kb on - strand at 151.056 kb on + strand at 151.056 kb on + strand at 151.057 kb on - strand at 151.057 kb on - strand at 151.206 kb on + strand at 151.207 kb on - strand at 151.238 kb on + strand at 151.238 kb on + strand at 151.239 kb on - strand at 151.242 kb on + strand at 151.518 kb on - strand, within SM_b20137 at 151.562 kb on + strand, within SM_b20137 at 151.655 kb on + strand, within SM_b20137 at 151.655 kb on + strand, within SM_b20137 at 151.655 kb on + strand, within SM_b20137 at 151.655 kb on + strand, within SM_b20137 at 151.655 kb on + strand at 151.656 kb on - strand, within SM_b20137 at 151.656 kb on - strand, within SM_b20137 at 151.853 kb on + strand, within SM_b20137 at 151.853 kb on + strand, within SM_b20137 at 151.907 kb on + strand, within SM_b20137 at 151.908 kb on - strand, within SM_b20137 at 151.908 kb on - strand, within SM_b20137 at 151.916 kb on + strand, within SM_b20137 at 151.965 kb on + strand, within SM_b20137 at 152.025 kb on + strand, within SM_b20137 at 152.026 kb on - strand, within SM_b20137 at 152.027 kb on + strand, within SM_b20137 at 152.027 kb on + strand, within SM_b20137 at 152.027 kb on + strand, within SM_b20137 at 152.027 kb on + strand, within SM_b20137 at 152.027 kb on + strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 148,847 + -0.9 148,848 - -0.2 148,848 - +0.3 148,912 - -1.1 148,933 - -0.1 149,174 + SM_b20135 0.25 -1.8 149,174 + SM_b20135 0.25 -0.8 149,174 + SM_b20135 0.25 +0.4 149,302 + SM_b20135 0.45 -1.8 149,336 - SM_b20135 0.50 +3.8 149,582 + SM_b20135 0.89 -0.3 149,583 - SM_b20135 0.89 +0.7 149,583 - SM_b20135 0.89 -0.3 149,583 - SM_b20135 0.89 -0.2 149,583 - SM_b20135 0.89 +0.5 149,584 + SM_b20135 0.90 -0.3 149,672 + -1.9 149,681 + -1.7 149,681 + -1.7 149,682 - +0.1 149,682 - -0.3 149,961 - SM_b20136 0.20 +1.3 150,032 + SM_b20136 0.26 +1.3 150,032 + SM_b20136 0.26 +0.2 150,032 + SM_b20136 0.26 -2.8 150,033 - SM_b20136 0.26 +0.1 150,129 + SM_b20136 0.33 -0.0 150,249 - SM_b20136 0.41 +0.1 150,327 - SM_b20136 0.47 -0.3 150,361 + SM_b20136 0.50 +0.4 150,361 + SM_b20136 0.50 +0.6 150,362 - SM_b20136 0.50 +0.9 150,590 + SM_b20136 0.66 +0.1 150,634 + SM_b20136 0.69 -0.2 150,634 + SM_b20136 0.69 +2.0 150,635 - SM_b20136 0.70 +1.2 150,650 + -1.4 150,651 - SM_b20136 0.71 +2.5 150,785 + SM_b20136 0.80 +0.4 150,785 + SM_b20136 0.80 +0.0 150,985 + -0.1 150,986 - +0.8 150,998 + -2.0 150,999 - -2.0 151,054 - +0.6 151,056 + -0.2 151,056 + +0.2 151,057 - +0.4 151,057 - -0.3 151,206 + +0.7 151,207 - -1.1 151,238 + +0.2 151,238 + +0.3 151,239 - -0.7 151,242 + -2.1 151,518 - SM_b20137 0.34 -1.0 151,562 + SM_b20137 0.39 -0.4 151,655 + SM_b20137 0.49 +0.5 151,655 + SM_b20137 0.49 +1.2 151,655 + SM_b20137 0.49 -0.1 151,655 + SM_b20137 0.49 -0.7 151,655 + +1.9 151,656 - SM_b20137 0.49 -0.1 151,656 - SM_b20137 0.49 -1.6 151,853 + SM_b20137 0.70 -1.5 151,853 + SM_b20137 0.70 +1.0 151,907 + SM_b20137 0.76 -0.4 151,908 - SM_b20137 0.76 +0.2 151,908 - SM_b20137 0.76 -0.2 151,916 + SM_b20137 0.77 +1.1 151,965 + SM_b20137 0.82 -0.1 152,025 + SM_b20137 0.88 -0.8 152,026 - SM_b20137 0.88 -1.0 152,027 + SM_b20137 0.88 +0.2 152,027 + SM_b20137 0.88 +0.0 152,027 + SM_b20137 0.88 +1.3 152,027 + SM_b20137 0.88 -2.7 152,027 + SM_b20137 0.88 -0.6 152,028 - SM_b20137 0.88 +0.4 152,028 - SM_b20137 0.88 -0.6 152,028 - SM_b20137 0.88 +0.2 152,028 - SM_b20137 0.88 +1.9 152,028 - SM_b20137 0.88 +1.8 152,028 - SM_b20137 0.88 -1.1
Or see this region's nucleotide sequence